Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0583
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -1

Query: 408 AKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSF 262
           A + W +   G P   ++++   +   I+H +     CF   G L+ S+
Sbjct: 343 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISW 391


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 509 GSARCSKRSEARQGARERTTALELYRC 429
           G   CSK S  R  A +     E YRC
Sbjct: 12  GKVLCSKASLKRHVADKHAERQEEYRC 38


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 560 CRFLAPEPTYSPPKRSVSSRK 622
           C   +P P  +PP R  S R+
Sbjct: 389 CVACSPPPRQTPPSRKESGRR 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,051
Number of Sequences: 438
Number of extensions: 4486
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)