Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0583
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 52 4e-07
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 47 2e-05
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 47 2e-05
At1g62580.1 68414.m07060 flavin-containing monooxygenase family ... 32 0.56
At1g57770.1 68414.m06554 amine oxidase family contains similarit... 31 0.74
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ... 31 1.3
At1g19250.1 68414.m02395 flavin-containing monooxygenase family ... 31 1.3
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ... 30 2.3
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi... 30 2.3
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 29 3.0
At1g63340.1 68414.m07160 flavin-containing monooxygenase-related... 29 3.0
At1g12200.1 68414.m01412 flavin-containing monooxygenase family ... 29 3.0
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 29 4.0
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 29 5.2
At1g51260.1 68414.m05765 acyl-CoA:1-acylglycerol-3-phosphate acy... 28 6.9
At1g12160.1 68414.m01408 flavin-containing monooxygenase family ... 28 6.9
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 9.1
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 28 9.1
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +3
Query: 102 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQS 257
P+++ +IVVGTG+ ES++AAA S G +VLH+D + YG +AS + L S
Sbjct: 12 PSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTS 63
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
+++VIV+GTG+ E I++ S G VLHMD +D+YGG S N L
Sbjct: 4 EYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQL 51
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 347 GETTDENKGEPRKVWSQADFAAEYX----KFNIDTTPKLLFSRGPLVELLISSNIARYL 511
GE+T N + K + + A E+ +N+D PK + G LV LI +++ +YL
Sbjct: 41 GESTSLNLNQLWKKFRGEEKAPEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYL 99
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
+++VIV+GTG+ E I++ S G VLHMD +D+YGG S N L
Sbjct: 4 EYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQL 51
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 425 FNIDTTPKLLFSRGPLVELLISSNIARYL 511
+N+D PK + + G LV +LI +++ +YL
Sbjct: 71 YNVDMMPKFMMANGKLVRVLIHTDVTKYL 99
>At1g62580.1 68414.m07060 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743
Flavin-binding monooxygenase-like domain
Length = 497
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 105 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 230
T V V+G G + A R G +V+ + +H GG+WA
Sbjct: 10 TSNHVAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWA 51
>At1g57770.1 68414.m06554 amine oxidase family contains similarity
to carotenoid isomerase [Lycopersicon esculentum]
GI:19550437, phytoene dehydrogenase (PDH1) GI:433144
from (Cercospora nicotianae); contains Pfam profile
PF01593 amine oxidase, flavin-containing
Length = 574
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEG 248
V+V+G+G+ A +R ++V+ ++S DH GG S+ +G
Sbjct: 55 VVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGGAAHSFEIKG 98
>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase GB:AAA21178 GI:349534
from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
Mus musculus; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 457
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 227
V+V+G G + A SR G V+ ++ GGLW
Sbjct: 13 VVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLW 49
>At1g19250.1 68414.m02395 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 515
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 105 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFE 245
T +V ++G G+ S +AAA + + N ++SD GG+W S +E
Sbjct: 9 TSSRVAIIGAGV--SGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYE 53
>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 507
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/90 (30%), Positives = 41/90 (45%)
Frame = +3
Query: 312 LKNGLLKRNLHKAKQLMKTKVNQEKYGAKPILQRSXGNLTSIQLQSCCSLAGPLSSF*SL 491
LK +LK++ + A K KVN EK A P+L+ G + + G +SS +
Sbjct: 179 LKPKVLKKS-YSALTTSKPKVNHEKVVASPVLKPKMGKRNDGKDEDGKVKKGTVSS--RV 235
Query: 492 RTSRAT*VPMRDPRPDLAQRSADAGSLLPS 581
+ +A P P L+ R A + SL S
Sbjct: 236 ASKKAPVTPRASLSPRLSVRLAGSSSLRKS 265
>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 87 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDH 212
+D D +F V +V TG + +I S++ KN+ D SDH
Sbjct: 341 VDPDSAVEFLVYMVSTGKLPAI--RTLSKLSKNLCRHDKSDH 380
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 619 KRMLMKXLTSIVGYSEEEMNNEFKDW 696
KRML + +I Y E ++N EF DW
Sbjct: 187 KRMLENRIPAIRSYVERKVNKEFGDW 212
>At1g63340.1 68414.m07160 flavin-containing monooxygenase-related /
FMO-related low similarity to flavin-containing
monooxygenase 2 (FMO2) from Homo sapiens [SP|Q99518]
Length = 398
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 105 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 230
T V V+G G + A R G +V+ + + GG+WA
Sbjct: 10 TSHHVAVIGAGAAGLVAARELRREGHSVVVFERGNQIGGVWA 51
>At1g12200.1 68414.m01412 flavin-containing monooxygenase family
protein / FMO family protein low similarity to FMO2 from
Homo sapiens [SP|Q99518]; contains Pfam profile: PF00743
Flavin-binding monooxygenase-like
Length = 465
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 96 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 230
D T V V+G G + A R G +V+ ++ GG+WA
Sbjct: 7 DPTTSRHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWA 51
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 482 EARQGARERTTALEL-YRC*ISXTPLQNRLGSILFLV 375
E R ALE YR +S TPLQNR+G + L+
Sbjct: 367 ERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLI 403
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 227
V V+G G + A R G V+ +D GGLW
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLW 49
>At1g51260.1 68414.m05765 acyl-CoA:1-acylglycerol-3-phosphate
acyltransferase, putative similar to
acyl-CoA:1-acylglycerol-3-phosphate acyltransferase
GI:4583544 from [Brassica napus]
Length = 376
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 190 RTFLPILLQAAATMDSTMPVPTTMTWKSVGKSSSIILVYIRH 65
R+F+P + T+ + P PT + S G+SS I L RH
Sbjct: 215 RSFVPAIYDCTLTVHNNQPTPTLLRMFS-GQSSEINLQMRRH 255
>At1g12160.1 68414.m01408 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO2 from Homo sapiens
[SP|Q99518]; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 468
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 227
V V+G G + R G V+ + H GGLW
Sbjct: 12 VAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLW 48
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 369 LFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSFMNSVGPQNY-MKPRVL 217
LFS + S C+D++ + H ++ + +C S + NS NY M P +L
Sbjct: 157 LFSVIQSSCSDTWDVFHVAEASFRLYCTSDNAVLP-SNSNRKMNYEMGPCLL 207
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 227
V V+G G + A R G V+ D GGLW
Sbjct: 13 VAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLW 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,698
Number of Sequences: 28952
Number of extensions: 348114
Number of successful extensions: 1098
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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