Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0582
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 30 2.4
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 30 2.4
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 30 2.4
08_01_0326 + 2928668-2928821,2931530-2931741,2931835-2931927,293... 27 4.0
11_01_0311 + 2322511-2323527 29 4.2
12_01_0861 + 8153108-8153266,8154633-8155136 29 5.6
04_04_0864 - 28852252-28854582 29 5.6
08_01_1002 + 10171942-10172859,10173369-10173452 28 9.8
07_01_0730 + 5562805-5563254 28 9.8
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 312 SGELTRPRKS---PVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTT 142
+GE R R S ++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 413 AGEYDRIRSSILDEAAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATV 471
Query: 141 M 139
+
Sbjct: 472 I 472
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 312 SGELTRPRKS---PVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTT 142
+GE R R S ++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 413 AGEYDRIRSSILDEAAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATV 471
Query: 141 M 139
+
Sbjct: 472 I 472
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 312 SGELTRPRKS---PVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTT 142
+GE R R S ++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 413 AGEYDRIRSSILDEAAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATV 471
Query: 141 M 139
+
Sbjct: 472 I 472
>08_01_0326 +
2928668-2928821,2931530-2931741,2931835-2931927,
2931997-2932119,2933372-2933650
Length = 286
Score = 26.6 bits (56), Expect(2) = 4.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 654 SSPDLEPKILXPTL-RATDLDVXPPAQQTR 568
+SP +PK P + DL V PP+QQTR
Sbjct: 242 ASPRRKPKKADPPAEKDLDLTVAPPSQQTR 271
Score = 21.0 bits (42), Expect(2) = 4.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 702 IATVAPGGYSSTLCTISSPDLE 637
I +A G SST T S DLE
Sbjct: 207 IPRIAEGASSSTPATASIADLE 228
>11_01_0311 + 2322511-2323527
Length = 338
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 675 SSTLCTISSPDLEPKILXPTLRATDLDVX-PPAQQTRHGGHGPIGPRL 535
SST + SSP L + + RAT L PP Q GH P+GP L
Sbjct: 48 SSTTASSSSPTLSVTV---SYRATLLAAPAPPLQLRLTWGHSPLGPTL 92
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 291 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 127
R +P SL + G RL S +VA+ + P P S+P D P TT+ + E
Sbjct: 91 RAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147
>04_04_0864 - 28852252-28854582
Length = 776
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 527 IARSRGPMGPCPPWRVCWAGGXTSKSVARRV 619
+AR P ++VCWAGG S + V
Sbjct: 250 VARGMAPRARVAAYKVCWAGGCFSSDILAAV 280
>08_01_1002 + 10171942-10172859,10173369-10173452
Length = 333
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +3
Query: 9 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 173
RA + SL L +DN CR G++P + +N+ + F FL WL SRV + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301
Query: 174 IPEREPEK 197
+ +RE K
Sbjct: 302 VRDRENRK 309
>07_01_0730 + 5562805-5563254
Length = 149
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 626 LXRPSVLLTWMXSPQPSRRATAGTDPLVPGSXQSSSD 516
L PS+ L P PS R+TAG+ P+ P + S+ D
Sbjct: 71 LRLPSLSLLDPPHPDPSPRSTAGSAPIGPVADGSAID 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,521,962
Number of Sequences: 37544
Number of extensions: 463956
Number of successful extensions: 1298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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