Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0582
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)                 49   4e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_48650| Best HMM Match : L27 (HMM E-Value=1.5)                       31   0.81 
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_35737| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_30427| Best HMM Match : bZIP_2 (HMM E-Value=4.3)                    28   7.5  
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)                  28   7.5  
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   10.0 
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   10.0 
SB_15635| Best HMM Match : DCP1 (HMM E-Value=0.16)                     28   10.0 

>SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)
          Length = 427

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +1

Query: 322 VIVMIXSDDELCAVVSIQXFSCPVFDNERXILYDGYYLTMTRRGGITL 465
           V +   S+ + CA++SIQ   CPV+D  R + + GYY T+T +G IT+
Sbjct: 110 VRIKFESNTQTCAILSIQGTQCPVYDLARNVEFTGYYQTVTTKGAITI 157


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 210 DVVAVSQAPSPESNPDSPLPVTTM 139
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 201 AVSQAPSPESNPDSPLPVTTM 139
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 200 PFLRLPLRNRTLIPRYP 150
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_48650| Best HMM Match : L27 (HMM E-Value=1.5)
          Length = 218

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 675 SSTLCTISSPDLEPKILXPTLRATDLDVXPPAQQTRHGGHGPIGPRLLAILVRCFDM 505
           S T  T    DL  K+L  +L A D+     +  +R  G G +G +LL   +  FD+
Sbjct: 99  SYTSRTAGRDDLRKKLLTDSLYAFDIRTDVTSYTSRTAGRGVLGEKLLTDPLNAFDL 155


>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 467 LKTRFRSGFYIVFISKHRTRIARSRGPMGP 556
           L+ RFR   + +F+   R R+AR+  P GP
Sbjct: 326 LQRRFRRALFELFVGPQRARMARNSLPCGP 355


>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +2

Query: 152 GNGESGFDSGEGA*ETATTSKEGSRRANYPLPAREVVTKNND-TGLLRGLVSSPDXRTS* 328
           GN   GF       E A T +  SRRA    P+    + + D TG  +G  +SP      
Sbjct: 422 GNVTIGFSEDNKKVERAVTKQPLSRRARSETPSSNERSSSMDWTGATKGQANSP-ANAGD 480

Query: 329 S*SXPTTSFALSSPYXTSRVPCSTT 403
           +   P       SP  T+  P S T
Sbjct: 481 ACRSPLVKQLQRSPQLTNEQPSSPT 505


>SB_35737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 RDEEGSRSLKTRFRSGFYIVFISKHRTRIARSRGPMGPC 559
           R+ E  + L+ R ++ F  V + +HR R+ RS    G C
Sbjct: 161 RELENQKPLRERIKAIFKKVRLYRHRRRVGRSDDERGHC 199


>SB_30427| Best HMM Match : bZIP_2 (HMM E-Value=4.3)
          Length = 169

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 RDEEGSRSLKTRFRSGFYIVFISKHRTRIARSRGPMGPC 559
           R+ E  + L+ R ++ F  V + +HR R+ RS    G C
Sbjct: 64  RELENQKPLRERIKAIFKKVRLYRHRRRVGRSDDERGHC 102


>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 RDEEGSRSLKTRFRSGFYIVFISKHRTRIARSRGPMGPC 559
           R+ E  + L+ R ++ F  V + +HR R+ RS    G C
Sbjct: 302 RELENQKPLRERIKAIFKKVRLYRHRRRVGRSDDERGHC 340


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/91 (25%), Positives = 39/91 (42%)
 Frame = -3

Query: 273  LFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHL 94
            +  +T SRA      +  PSL+  +  Q+ + ES P+ P P  +  V    +ES     +
Sbjct: 825  ILLITKSRAAESRAEQ--PSLEPSSRVQSRAAESRPEQPSPEPSRRVQSGAVESRGWHSI 882

Query: 93   KDASPVLDHAICKSYPDSSKLTTSDARPSVA 1
             + S  + +   +S  + S L  S    S A
Sbjct: 883  SEPSGRVQYRATESKAEQSSLEPSSGVQSRA 913


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 219 PSLDVVAVSQAPSPESNPDSPLP 151
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_15635| Best HMM Match : DCP1 (HMM E-Value=0.16)
          Length = 208

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 596 MXSPQPSRRATAGTDPLVPGSXQSSSDVLI*TLCR--SPIG 480
           +  P+PSR+  + + P+ P    S+S + I T C+   P+G
Sbjct: 109 LRGPEPSRKTRSYSTPVAPSPSVSTSGMSIVTYCQDNGPLG 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,317,375
Number of Sequences: 59808
Number of extensions: 472235
Number of successful extensions: 1274
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)