Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0582
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03390.1 68414.m00319 transferase family protein similar to a...    32   0.38 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.7  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.7  
At1g16270.1 68414.m01948 protein kinase family protein contains ...    28   8.2  

>At1g03390.1 68414.m00319 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 461

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 399 VEHGTREVLYGDDSAKLVVGXDHDYDVLXSGELTRPRKSPVSLFF 265
           VE+G  EV +G++   L+V  +   D+   G+LT P  + + L F
Sbjct: 97  VENGKLEVFFGEEQGVLMVSANSSMDLADLGDLTVPNPAWLPLIF 141


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 228 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 127
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 219 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 112
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = -3

Query: 735 DEEGQVRRRXRIATVAPGGYSSTLCTISSPDLEPKILXPTLRATDLDVXPPAQQTRHGGH 556
           ++ G++ R  ++A +        +    S + +  +    LR +D +      +TR+ G 
Sbjct: 783 EDGGEIARLHQVAPLTENRVDPQMKVTESEEFDAMV--ENLRTSDCEQEDEKSETRNAGL 840

Query: 555 GPIGPRL 535
            P+GP L
Sbjct: 841 PPVGPSL 847


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,158,918
Number of Sequences: 28952
Number of extensions: 330675
Number of successful extensions: 807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)