Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0581
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.7  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    26   6.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.6  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 578 MSHSNXKSSVMYPYYQLPVDKLHV 649
           M H+  K S++Y  + LPV +LH+
Sbjct: 279 MFHTEFKCSILYDIWMLPVRQLHL 302


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 545 VAVHEIGHSLGMSHSNXKSS 604
           V  HEIGH LG+ H   K S
Sbjct: 226 VVAHEIGHILGLIHDCNKKS 245


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK 640
           + + + +  I +     H     S++YPYY  P +K
Sbjct: 75  EIYFLRLESIDYEFSEFHIIINESIVYPYYTSPAEK 110


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 182  QEIADILYKKXGINARSLTDS*MVQYNEQGSHRKASRE 295
            Q + D+++K  GIN ++L +       E+G+H   SR+
Sbjct: 1819 QLVGDLVFKLAGINRKALQE----DEEEEGTHSDVSRK 1852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,194
Number of Sequences: 5004
Number of extensions: 52230
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)