Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0581
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0900 - 21436508-21437521 57 2e-08
02_05_0697 - 30999644-31000762 53 2e-07
06_01_0940 + 7235801-7236916 52 4e-07
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 50 3e-06
12_02_1061 - 25756366-25757567,25758692-25758797 31 1.3
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 30 2.2
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 28 9.0
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 28 9.0
>10_08_0900 - 21436508-21437521
Length = 337
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 IERLLENGLEVWAPHGXLHFTKLDEGKAX-IQVYFASGNHGDGFPFDGPGRVXAHAFPPP 452
+ + + WA + F + D+ +A I+V F +GNHGDG PFDGP + HAF P
Sbjct: 159 VRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPK 218
Query: 453 LGDIHFDDDETXGXXSDI 506
G +H D E D+
Sbjct: 219 NGRLHLDASEHWAVDFDV 236
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 512 DGEEDITDFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK---LHVDDILG 664
D D +VA HEIGH LG+ HS +VMYP + P +K L VDD+ G
Sbjct: 237 DATASAIDLESVATHEIGHVLGLGHSASPRAVMYPSIK-PREKKVRLTVDDVEG 289
>02_05_0697 - 30999644-31000762
Length = 372
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 STMSKXRIERLLENGLEVWAPHGXLHFTKLDEGK-AXIQVYFASGNHGDGFPFDGPGRVX 431
+++ + + + WA L FT++ A I + F SG+HGDG FDGP
Sbjct: 177 TSIDRATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTL 236
Query: 432 AHAFPPPLGDIHFDDDETXGXXSDI 506
AHAF P G H D E D+
Sbjct: 237 AHAFSPTDGRFHLDAAEAWVASGDV 261
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
D +VAVHEIGH LG+ HS+ S+MYP + K L DD+LG
Sbjct: 272 DLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLG 317
>06_01_0940 + 7235801-7236916
Length = 371
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 STMSKXRIERLLENGLEVWAPHGXLHFTKL-DEGKAXIQVYFASGNHGDGFPFDGPGRVX 431
+++ + + ++ + W+ L+FT+ A I + F G+HGDG FDGP
Sbjct: 177 TSIDRATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTL 236
Query: 432 AHAFPPPLGDIHFDDDETXGXXSDI 506
AHAF P G +H D E D+
Sbjct: 237 AHAFSPTNGRLHLDASEAWVAGGDV 261
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDKLHV--DDILG 664
D +VAVHEIGH LG+ HS+ S+M+P K+++ DD+ G
Sbjct: 271 DLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAG 316
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 61 AVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDI 165
A+K Q GL TG LD T RCG+ D+
Sbjct: 98 AIKMYQGNFGLDVTGDLDAATVSQMMAPRCGVADV 132
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 512 DGEEDITDFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
D D VA HEIGH+LG+ HS +SSVMYPY K L VDD+ G
Sbjct: 168 DASPAAVDLETVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEG 220
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDKLHVDDILG 664
D +VAVHEIGH+LG+ HS+ +SS+MY +Y+ V L DD+ G
Sbjct: 799 DLESVAVHEIGHALGLGHSSSESSMMYRHYRGKV-SLTDDDVKG 841
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 354 KAXIQV-YFASGNHGDGFPFDGPGRVXAHAFPPPLGDIHFDDDE 482
+A I+V ++ +G HGDG PFDGP V AHA P G I FD E
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAE 159
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
D +VA HEIGH LG+ HS+ +SS+MYP+ K L DD+ G
Sbjct: 435 DLESVAAHEIGHVLGLDHSSSRSSMMYPFISCRERKVRLTTDDVHG 480
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 368 SLFRFRQPWRRVPLRWPXSSXGPRVSTAT 454
S+ RF P +P+R P ++ GP VSTA+
Sbjct: 396 SVLRFEAPLPSLPVRMPVATYGPPVSTAS 424
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 451 GGGNAWAXTRPGPSKGNPSPWLPEA 377
GGG+ W +P PS G P LP A
Sbjct: 11 GGGSLWGPPQPPPSTGGGIPQLPAA 35
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 154 LKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSVQ 261
L+ + EDS ARN Y ++ G N R++T++ + S++
Sbjct: 230 LRFMGEDSEARNFCYSLEVGGNGRKLTWQGIPRSIR 265
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 351 GKAXIQVYFASGNHGDGFPFDGPGRVXAHAFPPPLG 458
G +YFAS +HG G + PG P +G
Sbjct: 3 GSGMPHMYFASSSHGTGAHYQSPGGAPITMAVPDMG 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,086,835
Number of Sequences: 37544
Number of extensions: 376612
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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