Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0581
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   7.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   GLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRC---GLKDIDE 171
           G +  L     T T  +   AV           TG   +PT++L KR++    G  D D+
Sbjct: 223 GATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDD 282

Query: 172 D 174
           D
Sbjct: 283 D 283



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 26  LATLTRHNLFPKLSRKCRPSQGYHKQ 103
           L     H L+P  S  C P  G  +Q
Sbjct: 63  LTAQAHHRLYPAFSSSCDPVPGNLEQ 88


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
          protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 80 ACIFLTASEIDC 45
          AC+ L AS IDC
Sbjct: 10 ACLLLAASPIDC 21


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 640 LVNGQLIIWIHNRRFXVRM*HAQRVXDLVDGH 545
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 47  LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 78


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 603 LLCIHIISCPLTSYTWTTYW 662
           L+ I+I  C L   +W ++W
Sbjct: 245 LIQIYIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 603 LLCIHIISCPLTSYTWTTYW 662
           L+ I+I  C L   +W ++W
Sbjct: 245 LIQIYIPCCMLVIVSWVSFW 264


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 736 TTLPCARCXLNSSDPFTFKYNSCMPQYVV 650
           TT   A C L+  DP   +Y   +PQ +V
Sbjct: 311 TTRHNATCYLSHVDPDVVQYFGYLPQDMV 339


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 736 TTLPCARCXLNSSDPFTFKYNSCMPQYVV 650
           TT   A C L+  DP   +Y   +PQ +V
Sbjct: 17  TTRHNATCYLSHVDPDVVQYFGYLPQDMV 45


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 367 KFISLPATMETGSPSMAXVEXWPTRF 444
           +F+ L + +  G+ S+  ++ W T+F
Sbjct: 4   EFVLLASLLYLGNESVHGIQKWGTQF 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,377
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)