Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0581
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24140.1 68414.m03045 matrixin family protein similar to matr... 61 7e-10
At1g59970.1 68414.m06755 matrixin family protein similar to SP|P... 58 6e-09
At1g70170.1 68414.m08074 matrixin family protein similar to SP|P... 54 1e-07
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta... 51 7e-07
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic... 51 9e-07
At5g47680.1 68418.m05886 expressed protein contains Pfam profile... 29 4.3
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 27 9.9
At3g19470.1 68416.m02468 F-box family protein contains F-box dom... 27 9.9
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi... 27 9.9
>At1g24140.1 68414.m03045 matrixin family protein similar to matrix
metalloproteinase [Cucumis sativus] GI:7159629; contains
InterPro accession IPR001818: Matrixin
Length = 384
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 309 WAPHGXLHFTKLDE-GKAXIQVYFASGNHGDGFPFDGPGRVXAHAFPPPLGDIHFDDDE 482
W L FT+++ + I + F SG HGDG PFDGP R AHAF PP G H D +E
Sbjct: 200 WEEVTPLTFTRVERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEE 258
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 524 DITDFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
+ D +VAVHEIGH LG+ HS+ + S+MYP + K L DD+ G
Sbjct: 275 EAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEG 323
>At1g59970.1 68414.m06755 matrixin family protein similar to
SP|P29136 Metalloendoproteinase 1 precursor (EC
3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
accession IPR001818: Matrixin
Length = 360
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 276 IERLLENGLEVWAPHGXLHFTKLDEG-KAXIQVYFASGNHGDGFPFDGPGRVXAHAFPPP 452
++R+ WA L+FT+ + +A I + F SG HGDG PFDG AHA PP
Sbjct: 173 VKRVFSRAFTRWAEVTPLNFTRSESILRADIVIGFFSGEHGDGEPFDGAMGTLAHASSPP 232
Query: 453 LGDIHFDDDE 482
G +H D DE
Sbjct: 233 TGMLHLDGDE 242
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 527 ITDFFAVAVHEIGHSLGMSHSNXKSSVMYP 616
+ D +VAVHEIGH LG+ HS+ + ++M+P
Sbjct: 261 VVDLESVAVHEIGHLLGLGHSSVEDAIMFP 290
>At1g70170.1 68414.m08074 matrixin family protein similar to
SP|P29136 Metalloendoproteinase 1 precursor (EC
3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
accession IPR001818: Matrixin
Length = 378
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 WAPHGXLHFTKLDE-GKAXIQVYFASGNHGDGFPFDGPGRVXAHAFPPPLGDIHFDDDET 485
W+ L+FT + + I + F +G+HGDG PFDG AHAF PP G H D DE
Sbjct: 196 WSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADEN 255
Query: 486 XGXXSDI 506
D+
Sbjct: 256 WVVSGDL 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 533 DFFAVAVHEIGHSLGMSHSNXKSSVMYP 616
D +VAVHEIGH LG+ HS+ + S+MYP
Sbjct: 273 DLESVAVHEIGHLLGLGHSSVEESIMYP 300
>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
metalloproteinase [Arabidopsis thaliana] GI:3128477;
contains InterPro accession IPR001818: Matrixin
Length = 364
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 276 IERLLENGLEVWAPHGXLHFTKLDE-GKAXIQVYFASGNHGDGFPFDGPGRVXAHAFPPP 452
++ + W+ + F ++D+ A +++ F +G+HGDG PFDG AHAF P
Sbjct: 182 VKTVFRRAFSQWSSVIPVSFEEVDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPE 241
Query: 453 LGDIHFDDDETXGXXSDI 506
G +H D ET D+
Sbjct: 242 NGRLHLDAAETWIVDDDL 259
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 506 IEDGEEDITDFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
++ E D +VA HEIGH LG+ HS+ +S+VMYP + K L VDD+ G
Sbjct: 259 LKGSSEVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAG 313
Score = 34.3 bits (75), Expect = 0.087
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Frame = +1
Query: 52 ISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD----IDEDSHARNRRYIIQEG-- 213
+ A+ Q GLP TG LD T L RCG+ D I+ D Y G
Sbjct: 98 LESAISLYQENLGLPITGRLDTSTVTLMSLPRCGVSDTHMTINNDFLHTTAHYTYFNGKP 157
Query: 214 -WNKREVTYRL 243
WN+ +TY +
Sbjct: 158 KWNRDTLTYAI 168
>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
to metalloproteinase [Arabidopsis thaliana] GI:3128477;
contains InterPro accession IPR001818: Matrixin
Length = 342
Score = 50.8 bits (116), Expect = 9e-07
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 276 IERLLENGLEVWAPHGXLHFTKLDEGK-AXIQVYFASGNHGDGFPFDGPGRVXAHAFPPP 452
I R+ WA + F + ++ A I++ F +G+HGDG PFDG V AH F P
Sbjct: 160 IRRVFRRAFGKWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPE 219
Query: 453 LGDIHFDDDETXGXXSD 503
G +H D ET D
Sbjct: 220 NGRLHLDKAETWAVDFD 236
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 509 EDGEEDITDFFAVAVHEIGHSLGMSHSNXKSSVMYPYYQLPVDK--LHVDDILG 664
E+ D +VAVHEIGH LG+ HS+ K + MYP + K L++DD++G
Sbjct: 237 EEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVG 290
>At5g47680.1 68418.m05886 expressed protein contains Pfam profile
PF04243: Protein of unknown function (DUF425)
Length = 344
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 135 QKKKMRFERYR*RLARKKSQIYYTRRXE*TRGHLQTPEWFSTMSKXRIERLLE 293
QKK+++ +RY + A KK+Q +R E G + EW T++ E L+
Sbjct: 34 QKKQLKQQRYEAKKAEKKAQEKEHKRKE---GERKLKEWEETLANATEEERLK 83
>At4g38190.1 68417.m05391 cellulose synthase family protein similar to
cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5 (gi:9622882)
from Zea mays
Length = 1111
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 251 PFRSL*VTSRLFXPSCIIYLRFLACESSSISFKPHLFLLNNCLVG 117
PF SL + F P+ ++ + SISF +L ++ CL+G
Sbjct: 887 PFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIG 931
>At3g19470.1 68416.m02468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 382
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 600 LLLCIHIISCPLTSYTWTTYWGMQELY 680
LLLCI I W YWG L+
Sbjct: 118 LLLCISITESKTRLVVWNPYWGHTRLF 144
>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 597
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 591 LECDMPREXPISWTA 547
L C+MP + P+SWTA
Sbjct: 267 LFCEMPEKNPVSWTA 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,882,153
Number of Sequences: 28952
Number of extensions: 287141
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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