Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0580
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   2.4  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   3.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   7.3  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 77  NNLTGRDLEEFNRIHFGRRNNLE 145
           NN+  R +EE N I  G+R  LE
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLE 30


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 274 NAELFLPHNSRGSGLXVLGRESVCGD 197
           NAEL LP+N   S    L + S+C D
Sbjct: 175 NAELGLPNNKDSSNGVRLDKSSICID 200


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 172 SDRGXFQFDFKVIPPPKMNSVELFQVAPGQ 83
           ++RG   + FK   PP  N   LF   P +
Sbjct: 781 TNRGKNFYKFKAPSPPNQNGKSLFSFHPSR 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 880,413
Number of Sequences: 5004
Number of extensions: 11423
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)