Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0580
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56...    27   3.6  
08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671...    26   6.3  
02_01_0402 - 2934074-2937217                                           26   6.3  
12_02_1026 - 25478462-25479232,25479249-25479821                       25   8.3  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     25   8.3  

>07_01_0076 +
           562248-562430,562540-562637,562887-562954,563376-563421,
           563661-563767,563978-564027,564120-564202,564705-564819
          Length = 249

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 244 RGSGLXVLGRESVCGDV 194
           +GSG+ VLG E  CGDV
Sbjct: 61  KGSGVVVLGSEVGCGDV 77


>08_02_1157 +
           24765719-24766544,24766569-24766637,24767031-24767180,
           24767296-24768503
          Length = 750

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 220 GRESVCGDVEVSX-LSCSDRGXFQFDFKVIPPPKMNSVELFQVAPGQVVVYYRFKAVSFI 44
           G    CG+  +       D   F+  FK++  P  +  +LF   PG  V  ++ K    +
Sbjct: 30  GCTDTCGNTTIPYPFGIGDERCFREGFKLVCDPAYDPPKLFMNGPGYEV--HKIKLARRV 87

Query: 43  LH 38
           LH
Sbjct: 88  LH 89


>02_01_0402 - 2934074-2937217
          Length = 1047

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  NNNLTGRDLEEFNRIHF 124
           NNNLTG   E  N++HF
Sbjct: 606 NNNLTGTIPEALNKLHF 622


>12_02_1026 - 25478462-25479232,25479249-25479821
          Length = 447

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 145 FKVIPPPKMNSVELFQVAPG 86
           F+  PPP +N+ ++  ++PG
Sbjct: 301 FQAAPPPPLNAFDIISMSPG 320


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 247 SRGSGLXVLGRESVCGDVEVSXLSCSDRGXFQFD 146
           +R S   V+G  S C +V++   SCS  G  Q D
Sbjct: 157 TRQSMQYVIGCSSTCDNVDLKNGSCSGAGCCQAD 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,969,821
Number of Sequences: 37544
Number of extensions: 86002
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)