Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0580
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical ...    26   4.4  
U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical p...    26   5.8  

>AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical
           protein F26D11.2 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  VMENETHSLESIINNNLTGRDLEEFNRIHFG 127
           +  N    +E  + ++LTG + ++ N+IH G
Sbjct: 121 IYSNAAERIEKKLQSDLTGSNAQKANKIHMG 151


>U80836-11|AAB37899.1|  180|Caenorhabditis elegans Hypothetical
           protein B0432.3 protein.
          Length = 180

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 133 PPPKMNSVELFQVAPGQVV 77
           PPPKM++  LF++A G  V
Sbjct: 150 PPPKMSAETLFELAYGDTV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,920,562
Number of Sequences: 27780
Number of extensions: 67138
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)