Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0580
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15340.1 68416.m01936 expressed protein                             27   3.1  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    26   5.4  
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    25   9.4  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    25   9.4  
At1g06440.1 68414.m00682 expressed protein                             25   9.4  

>At3g15340.1 68416.m01936 expressed protein
          Length = 487

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 145 FKVIPPPKMNSVELF 101
           F+V+PPP+MN + LF
Sbjct: 11  FEVVPPPEMNDLVLF 25


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 65  SIINNNLTGRDLEEFNRIH 121
           SI NNNLTG+  + F ++H
Sbjct: 499 SIANNNLTGQIPQSFGQLH 517


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 193 EVSXLSCSDRGXFQFDFKVIPPPKMNSVE 107
           E    +CS  G  +   K++P P+ NS+E
Sbjct: 119 ESGGTACSQEGKLKKPDKILPCPRCNSME 147


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 193 EVSXLSCSDRGXFQFDFKVIPPPKMNSVE 107
           E    +CS  G  +   K++P P+ NS+E
Sbjct: 119 ESGGTACSQEGKLKKPDKILPCPRCNSME 147


>At1g06440.1 68414.m00682 expressed protein
          Length = 390

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 196 VEVSXLSCS-DRGXFQFDFKVIPPPKMNSVELFQ 98
           VE S   CS DR   QF FK   PP M   + F+
Sbjct: 218 VECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFK 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,687,825
Number of Sequences: 28952
Number of extensions: 64854
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)