Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0578
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 31 0.12
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 1.5
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 2.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 4.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 4.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.5
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 4.5
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 25 6.0
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.9
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 7.9
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 25 7.9
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 31.1 bits (67), Expect = 0.12
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 ASYNSRRCQHRCRL-GRQIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
A Y++ + Q L G QIRS + A SG+G TL G A R+ P
Sbjct: 187 ADYSTMKLQQLLALSGNQIRSSSSKAKISGTGITLNLGAASRFLMP 232
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +3
Query: 210 WACPPVGRPSACTNGDRVPQGREVIFQICDHFQHGRV 320
W PP+ R + + G+++I +C F H V
Sbjct: 214 WQIPPIARVNLVGQLPKGLSGKDIIVSLCGAFNHDEV 250
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 163 PADHAVRSGSGKTLRAGPAHRWDAPRHV-QTVIEFHKEGKLSFKYVTTFNMDE 318
P +A S KT + G A A R + Q IEF E S KY+++ N ++
Sbjct: 37 PRKNATSLDSKKTTKKGVALPEIAERELTQEDIEFFNENPSSLKYLSSINPED 89
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 361 YMWNEFFKHIDIEPSNAHVLXGNASDLV 444
+ +N+ K+ D+ +AHV+ A+DLV
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLV 1042
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -1
Query: 249 LYMPRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIRRIVRDYFHTLAV 70
+Y P + PS LP +N V+ + +++ + +S+ ++ V DYF+T
Sbjct: 178 VYEPDAIVTTTDPS---LPLLDSNAVVECFNSYQSEADPVSNASKALKH-VNDYFNTSYA 233
Query: 69 TISYYG 52
YYG
Sbjct: 234 PAEYYG 239
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 132 MLASSRIIRRIVRDYFHT-LAVTISYY 55
++A RI RRI +DY H L+ I Y+
Sbjct: 165 IIAGERIARRIRQDYLHAILSQNIGYF 191
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 34 WNSFVLSVIRYCHR*RVKVIPNYASYNSRRCQHRCRLGRQIRSPADHAVRSGSGKTL 204
+N + +VI+ C R KV+ +A+ C H R+G+ + A S SGK +
Sbjct: 940 FNEELGAVIQVCDRDIAKVLELFAANGLSTCVH--RIGKVLSGQAQTISFSRSGKII 994
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 304 FNMDEYVGLPRDHPESY 354
++ + + LPRDHPE Y
Sbjct: 82 YDTERKISLPRDHPEYY 98
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 158 VLQRITQFAPGPGRHFV 208
V RI PGPG+H++
Sbjct: 109 VANRIFSLVPGPGKHYI 125
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 231 VPPVGRPSTKCLPGPGANCVIRWR 160
V +G S +PG G + V+RW+
Sbjct: 590 VSEIGIESFNAVPGEGVDVVLRWK 613
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 304 FNMDEYVGLPRDHPESYHYY--MWNEFFKHIDIEPSN-AHVLXGNASD 438
F + +VG+ P S HY+ N++F ++D ++ AH AS+
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQPASE 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,354
Number of Sequences: 5004
Number of extensions: 48373
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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