Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0578
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0121 + 16864735-16865619,16865706-16866026 29 2.7
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 2.7
12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810 29 3.5
08_01_0831 + 8086470-8087354,8087441-8087730,8096373-8096412,809... 29 3.5
06_03_0573 + 22407489-22408373,22408460-22408795 29 3.5
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 3.5
07_01_1077 - 9687394-9687515,9696615-9696733,9696815-9697104,969... 28 4.6
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 28 4.6
03_04_0145 + 17683681-17683982,17686058-17686145 28 4.6
06_03_0176 - 17575155-17575761,17575935-17575972 28 6.1
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 27 8.1
10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648 27 8.1
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 27 8.1
>06_03_0121 + 16864735-16865619,16865706-16866026
Length = 401
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSKP 336
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 255 HRLYMPRGVPPVGRPSTKCLPGPGANCVIRWRTN 154
H L P PP G K LP PG WR N
Sbjct: 884 HELAFPSRAPPPGSADAKALPNPGD---YHWRKN 914
>12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810
Length = 401
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>08_01_0831 +
8086470-8087354,8087441-8087730,8096373-8096412,
8096878-8096957,8099643-8099733,8099989-8100052,
8100553-8100818
Length = 571
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>06_03_0573 + 22407489-22408373,22408460-22408795
Length = 406
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 237
Q RSP H V+ G G T+R+ P + P
Sbjct: 286 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 314
>07_01_1077 -
9687394-9687515,9696615-9696733,9696815-9697104,
9697191-9698075
Length = 471
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGP 216
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGP 216
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 223 GGQAQHEVSSRTRSELRDPLENESGGPVGNDAG 125
GG+ V SR RSE+RD + +++ GP DAG
Sbjct: 42 GGEQSGGVWSR-RSEMRDVVGSDAMGPAERDAG 73
>06_03_0176 - 17575155-17575761,17575935-17575972
Length = 214
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 124 CQHRCRLGRQIRSPADHAVRSGSGKTLRAGPAHRWDAPRHVQTVIEFHKEGKLSFKYVTT 303
C+ C + R R R G+ R GPA RW + R T ++ SF+ +
Sbjct: 64 CRVECNVARHRRL---RLRRGRGGRGARRGPATRWWSSRRATT---SRRQDYTSFEGPSM 117
Query: 304 FNMDEYVGLPRDHPE 348
+ E+ G R H E
Sbjct: 118 NQLYEFGGSVRHHDE 132
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 55 VIRYCHR*RVKVIPNYASYNSRRCQHRCRLG----RQIRSPADHAVRSGSGKTLRAGPAH 222
V+ Y H+ + V+P Y ++N +H Q RSP H ++ G T+R+ P
Sbjct: 275 VVSYSHQ--LPVVP-YNAFNPPPQEHVLMKSDPPIAQRRSPRQHTIQGSGGPTIRSDPQP 331
Query: 223 RWDAP 237
+ P
Sbjct: 332 QTSKP 336
>10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648
Length = 400
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 151 QIRSPADHAVRSGSGKTLRAGP 216
Q RSP H V+ G G T+R P
Sbjct: 308 QHRSPRQHTVQGGGGPTIRLDP 329
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +3
Query: 189 VREDTSCWACPPVGRPSACTNGDRVPQG-REVIFQICDHFQHGRVCGXXXXXXXXXXXXH 365
VR P + RP DR+P G R+ + DHF GRV
Sbjct: 67 VRARAGTIQAPGLARPGGAVETDRLPSGVRDRAMEAVDHF-GGRVTIGDVASRAGLQLAQ 125
Query: 366 VERVLQ 383
ER LQ
Sbjct: 126 AERALQ 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,101
Number of Sequences: 37544
Number of extensions: 377486
Number of successful extensions: 1125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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