Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0578
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   2e-34
SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)          34   0.072
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)                  30   1.2  
SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44)            30   1.6  
SB_56516| Best HMM Match : PAN (HMM E-Value=0.00055)                   29   2.1  
SB_26517| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            28   6.3  
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score =  142 bits (343), Expect = 2e-34
 Identities = 60/85 (70%), Positives = 72/85 (84%)
 Frame = +1

Query: 253 VIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLXGNA 432
           +IEF+K G+LSFKYV TFNMDEYVGLP+DHPESYH YMW+ FFKHIDI P NAH+L GNA
Sbjct: 55  LIEFYKRGELSFKYVKTFNMDEYVGLPKDHPESYHSYMWDNFFKHIDILPENAHILDGNA 114

Query: 433 SDLVLXCQRFEKLIQXAGGVHLFIG 507
           +DLV  C +FE+ I+ AGGV +F+G
Sbjct: 115 ADLVQECNQFEEKIKAAGGVDVFVG 139



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +2

Query: 101 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHFV 208
           MRL+I   +  V++WAA++V  RI Q  PGP  +FV
Sbjct: 1   MRLVIQNTSVEVSEWAAKYVRNRILQKNPGPDNYFV 36



 Score = 34.3 bits (75), Expect = 0.072
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 510 IGPDGHIAFNEPG 548
           IGPDGHIAFNEPG
Sbjct: 141 IGPDGHIAFNEPG 153


>SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)
          Length = 62

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 510 IGPDGHIAFNEPG 548
           IGPDGHIAFNEPG
Sbjct: 2   IGPDGHIAFNEPG 14


>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
          Length = 1083

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 175 AVRSGSGKTLRAGPAHRWDAPRHVQTVIEFHKEGKLSFKY 294
           A+ S SG+   AG ++  DAPRH + +  + K+  +SFK+
Sbjct: 680 ALESISGREKAAGDSNEGDAPRHPKMLSLWKKKLAVSFKH 719


>SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44)
          Length = 273

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 175 AVRSGSGKTLRAGPAHRWDAPRHVQTVIEFHKEGKLSFKY 294
           A+ S SG+   AG ++  DAPRH + +  + K+  +SFK+
Sbjct: 1   ALESISGREKAAGDSNESDAPRHPKMLSLWKKKLAVSFKH 40


>SB_56516| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 293

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 229 PTGGQAQHEVSSRTRSELRDPLENESGGPVGNDAGIFENYKTHSSGLLSHVSGDN 65
           P  G   H + S +  +  + L   S G   ++AG+   YKT +SGL+   + DN
Sbjct: 6   PVFGVFSHPILSISTLDATNALVFVSLGGSDDNAGVLLEYKTRNSGLIRFNTKDN 60


>SB_26517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -3

Query: 340 GHGEDPHTRPC*KWSHI*KITSLPCGTLSPFVHAEGRPTGGQAQHEVSSRTRSELRDPLE 161
           G GE+   R   +W  I  ITS    T    V +EGR +GG   H  +    + L+D   
Sbjct: 30  GIGEEIKGRKREQWLFITGITSRRVDTK---VESEGRSSGGCTFHMRTFYNLAILQDEKT 86

Query: 160 NESGGPVG 137
            ESG P G
Sbjct: 87  VESGAPRG 94


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 247 VHAEGRPTGGQAQHEVSSRTRSELRDPLE 161
           +H  GRP  G   +E +   R ELR+PL+
Sbjct: 200 LHRAGRPWDGNTFYENTDVLRKELREPLK 228


>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 238 EGRPTGGQAQHEVSSRTRSELRDPLENESGGPVGNDAG 125
           EG   G + ++E  +   +E  +  ENE G   GN+ G
Sbjct: 93  EGNEEGNEEENEEGNEEENEEGNEEENEEGNEEGNEEG 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,202
Number of Sequences: 59808
Number of extensions: 405319
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)