Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0578
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...   113   6e-26
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AL032623-15|CAJ76975.1|  260|Caenorhabditis elegans Hypothetical...    30   1.4  
AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical ...    30   1.4  
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    29   3.1  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    29   3.1  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     29   3.1  
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    28   5.5  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    27   7.2  

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score =  113 bits (273), Expect = 6e-26
 Identities = 47/85 (55%), Positives = 64/85 (75%)
 Frame = +1

Query: 253 VIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLXGNA 432
           +IEF+  G +SF+ V TFNMDEYV LPRDH ESYH +M++ FF+HIDI P+N H+L GN 
Sbjct: 51  LIEFYNAGVISFEKVKTFNMDEYVDLPRDHTESYHSFMFDNFFRHIDINPANIHILDGNT 110

Query: 433 SDLVLXCQRFEKLIQXAGGVHLFIG 507
           SD    C+ +E+ I+ +GG+ LF+G
Sbjct: 111 SDHEKECEEYERKIKESGGIDLFVG 135



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 510 IGPDGHIAFNEPG 548
           IGPDGHIAFNEPG
Sbjct: 137 IGPDGHIAFNEPG 149



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 101 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHFVXXXXXXXXXXXMYKR 253
           M+LII E+A  VA++AAR+V+ +I + A   G++ V           MYK+
Sbjct: 1   MKLIIEENADKVAEFAARYVVTKINE-ATENGKYLVLGLPTGSTPLGMYKK 50


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 394 IEPSNAHVLXGNASDLVLXCQRFEKLIQXAGGVHLFIGVSVRTVTSRSTNRGSFAGVSDA 573
           IEP+N  +L GN+S ++  C   ++++Q     H++IG       + +T   S+ G +  
Sbjct: 181 IEPTNVCLLNGNSS-VLSRCGEIDRMLQFFDDTHVYIGFKDSIQDASNTYIYSYIGYAFT 239

Query: 574 S 576
           S
Sbjct: 240 S 240


>AL032623-15|CAJ76975.1|  260|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1c protein.
          Length = 260

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 WDAPRHVQTVIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEF 378
           W   R V   I+  + GK+S   ++   +   +      P SYH   WNEF
Sbjct: 28  WQTQRRVPAEIQLPQVGKISIPELSEKEIQRTIVA---QPASYHKVQWNEF 75


>AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1b protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 WDAPRHVQTVIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEF 378
           W   R V   I+  + GK+S   ++   +   +      P SYH   WNEF
Sbjct: 77  WQTQRRVPAEIQLPQVGKISIPELSEKEIQRTIVA---QPASYHKVQWNEF 124


>AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1a protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 WDAPRHVQTVIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEF 378
           W   R V   I+  + GK+S   ++   +   +      P SYH   WNEF
Sbjct: 77  WQTQRRVPAEIQLPQVGKISIPELSEKEIQRTIVA---QPASYHKVQWNEF 124


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 240 PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIRRI 100
           P    P+ +  +K  P P +N V R+R+ ++ Q  T+L SS  I ++
Sbjct: 238 PAAPNPIAQYKSKMPPPPISNPVARYRSMISQQMPTILPSSAAIGQL 284


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 240  PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIR 106
            PRG+PP  RP+   LPG   N   R  T    + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 240  PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIR 106
            PRG+PP  RP+   LPG   N   R  T    + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 240  PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIR 106
            PRG+PP  RP+   LPG   N   R  T    + AT L S ++ R
Sbjct: 1307 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1346


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 240  PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIR 106
            PRG+PP  RP+   LPG   N   R  T    + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 240  PRGVPPVGRPSTKCLPGPGANCVIRWRTNLAAQSATMLASSRIIR 106
            PRG+PP  RP+   LPG   N   R  T    + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 332 GRPTYSSMLKVVTYLKDNFPSLWNSIT 252
           G+  Y  MLK    ++D  PSLWN IT
Sbjct: 270 GKEYYWKMLKRNRIMRDIKPSLWNQIT 296


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 290 LKDNFPSLWNSITVCTCRGASHRWAGPARSVFPDPERTA*SAGERI 153
           L D   ++ N + V T +  S RWA   +  F D E +A   GE++
Sbjct: 123 LTDQELTILNILRVRTDKDTSVRWAVREKFTFSDDENSAAKTGEKL 168


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 127 QHRCRLGRQIRSPADHAVRSGSG 195
           QHR   G + RSP DH + S SG
Sbjct: 100 QHRPIQGHRSRSPEDHMIGSASG 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,191
Number of Sequences: 27780
Number of extensions: 296997
Number of successful extensions: 857
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)