Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0576
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    28   1.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.0  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   7.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.3  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 405 LDERKDQRRHVRLRFYCRVLPQNRLQGSLPARSL 506
           LDER +  R++R   Y + L +  ++  LP RS+
Sbjct: 69  LDERSEMVRYLRASGYAKFLEKYLIEEELPVRSI 102


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 86   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 220
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 519  RDRSVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSP 394
            R  S+    V T+A G  E   + SV++H  V   + P RSP
Sbjct: 1753 RSFSIVESTVPTIASG--EGDDNHSVEDHLKVPTDNEPRRSP 1792


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 107 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 214
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 325  LQMEEAVKVFRVLYYAKDFD 384
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,785
Number of Sequences: 5004
Number of extensions: 45656
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)