Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0576
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   1.8  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               29   4.2  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   5.6  
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  27   9.8  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 286 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 456
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 457 A 459
           +
Sbjct: 280 S 280


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 176 MFEDIKEIAKEYNIEKSCDKYMNV-DVVSSSWRCIRWACSRVE 301
           + E++ EI +  +I+++    +NV D++ SSW  +  AC   E
Sbjct: 282 VMEEVAEIPEVSDIDRNSSMKVNVMDLIESSWEQMEQACDTEE 324


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 397 TACWMRERINGGMFVYAFTAACFHR 471
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 531 QRRSRDRSVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHEN 385
           Q+  R RS+R+  +  L V  VE    KS D     DP+   +    E+
Sbjct: 209 QKMHRTRSIRTSGIGKLVVTIVEGVDLKSSDPSGMSDPYCEVSMGSQEH 257


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 361 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 477
           L+  ++F+V   T C + ER N      + +  CF+  D
Sbjct: 70  LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,581,879
Number of Sequences: 59808
Number of extensions: 373537
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)