Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0573
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 146 PPHEQTSPKENEIFTTSHNV 87
           PPH    P  N + T  H++
Sbjct: 738 PPHPHHQPPRNPVGTNPHDI 757


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 146 PPHEQTSPKENEIFTTSHNV 87
           PPH    P  N + T  H++
Sbjct: 630 PPHPHHQPPRNPVGTNPHDI 649


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 63  CSVKRLTFHIVTCCKYFVFLWGRLFV 140
           C+    T H++ CC +  F    LF+
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLFL 196


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 181  WASPPLRLQLGNARGHK 231
            W SPPL    G  +G+K
Sbjct: 1121 WVSPPLTAANGVIKGYK 1137


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 125 GTFVRGVEQNRQR 163
           GTF  G+E  RQR
Sbjct: 225 GTFAPGMEPKRQR 237


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 125 GTFVRGVEQNRQR 163
           GTF  G+E  RQR
Sbjct: 225 GTFAPGMEPKRQR 237


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 278 GVGQPRATGDPPSPILLWPRALPSCKRSG-GEAQ----PHTESIFDDFVPPHEQTS 126
           G  +P A      P++L  R L SC ++G G+      P   ++  D  PP+ + +
Sbjct: 177 GYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENN 232


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 125 GTFVRGVEQNRQR 163
           GTF  G+E  RQR
Sbjct: 225 GTFAPGMEPKRQR 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,335
Number of Sequences: 336
Number of extensions: 1860
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)