Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0573
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   1.5  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   2.5  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   3.4  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   5.9  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    25   7.8  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.8  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 231  FVAACVTQLQTQRGRSPTPHGVNL*RFCSTPRTNVPKGKR 112
            F AA  +       +SP P+G+      S  +TN P G++
Sbjct: 1110 FGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAPPGRK 1149


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 145 GTKSSKIDSVWGWASPPLRLQLGNARGHKRMGEGGSPVARG 267
           GT SSK  +    +   L  Q G   GH R+G+  SP+ RG
Sbjct: 52  GTASSKRRNEITCSGRKLYRQKGT--GHARVGDASSPIRRG 90


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 156 RFCSTPRTNVPKGKRNI-YNKSQC 88
           R C TP TN+   K+NI Y +  C
Sbjct: 23  RLCFTPPTNLHNNKKNIFYTRYDC 46


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 267 AARXRGSALTHPFVAACVTQLQTQRGRSPTPHGVNL*RFCSTPRTN 130
           A R R  +  +     CV +    R  S TPHG N  R  STP +N
Sbjct: 408 ARRFRSGSDVNNVDRKCVKKQMNYREESHTPHG-NTTRKTSTPVSN 452


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -3

Query: 77  PFNRT--WISRFNVSNVY 30
           PFNR   W+S F++ NVY
Sbjct: 369 PFNREALWLSNFDMENVY 386


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 261 ARLSHTSEKHPRAIXGXLSA 320
           ARLSH  +K  RA  G LSA
Sbjct: 63  ARLSHNQKKVQRAYGGCLSA 82


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -3

Query: 194 GGEAQPHTESIFDDFVPPHEQTSPKENEIFTTSHNV 87
           GG A PH       F        P +NE+ T   NV
Sbjct: 178 GGGAGPHARRSHPSFGGSRPSQPPAQNEVITRPLNV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,447
Number of Sequences: 5004
Number of extensions: 29593
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)