Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0573
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 33 0.12
08_02_0626 - 19443797-19443917,19444136-19444761 31 0.63
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 31 0.63
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 29 1.9
08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001... 29 2.5
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 29 2.5
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 28 3.3
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 28 3.3
01_06_1454 + 37498513-37499154 28 4.4
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 5.8
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 27 7.7
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 281 RGVGQPRATGDPPSPILLWPRALPSCKRSGGEAQPHTESIFDD-FVPPHEQTSPKENEIF 105
RG+ P + +PI PR+ PS + AQ + I D+ F P H + + NE F
Sbjct: 178 RGIRFPGRDDESLAPIFTPPRSAPSAEPYSAAAQEGYQEIPDESFAPVHVVPAVQVNEAF 237
Query: 104 TTSHN 90
+ N
Sbjct: 238 EVARN 242
>08_02_0626 - 19443797-19443917,19444136-19444761
Length = 248
Score = 30.7 bits (66), Expect = 0.63
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 291 PRAIXGXLSALRRHRELCXVVLNVXXRXLXAHRVILSAXXP 413
P AI L L +E C V V AHRV+LSA P
Sbjct: 151 PPAICCHLEQLLESKEGCDVTFQVERSDYDAHRVVLSARSP 191
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 30.7 bits (66), Expect = 0.63
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 GGTKSSKIDSVWGWASP-PLRLQLGNARGHKRMGEGGSPVARGCPTPRRNIRAPXSAXSP 318
GGT S + S SP P +L + R + GSP+ R P PRR + P SP
Sbjct: 301 GGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSP 360
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 247 GSPVARGCPTPRRNIRAPXSAXSPHCD 327
G R P+PRR+ RAP S +PH D
Sbjct: 22 GGRYRRRSPSPRRHHRAPPSNPNPHRD 48
>08_02_0505 +
17897038-17898870,17899049-17899108,17900034-17900150,
17900352-17900389,17900446-17900641
Length = 747
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 319 AEXSPXMARGCFSEVWDSRAXPGIRPHPSF 230
A +P A+ F W+ R P RPHP+F
Sbjct: 26 ARVNPFTAKAAFIRYWNRRV-PNNRPHPAF 54
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 19 FPSL*TF--ETLNRDIHVLLNG*HSTL*LV----VNISFSFGDVCSWG 144
F S TF NR ++ LNG + + ++ +N+S FG + SWG
Sbjct: 178 FTSFPTFGLSAFNRGFYISLNGTYVGIGMISPHLINVSMLFGSIISWG 225
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 212 PSCKRSGGEAQPHTESIFDDFVPPHEQTSPKENEIFTTSHNVEC 81
PS K G + SI DD EQ PK + T NV C
Sbjct: 64 PSKKTRGVSQRAKKRSIGDDHADDTEQPPPKRSRSKATRWNVSC 107
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 266 PRATGDPPSPILLWPRALPSCKRSGGEAQPHT-ESIFDDFVPPHEQ 132
P DPP+P LL+P + PS R P + + D+ + PH++
Sbjct: 39 PPPAPDPPTP-LLFPESAPSTPREEYHTPPPSLDEARDEALVPHQE 83
>01_06_1454 + 37498513-37499154
Length = 213
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 122 LGTFVRGVEQNRQRLTP-CGVGLRPRCVCSWVTHAATKGWVRADPRXRAAVPHL 280
L F +G +R R+ P CG G RC+ W+ T R +P AA L
Sbjct: 149 LSEFAQG---HRVRVLPRCGHGFHARCIDRWLAARQTCPTCRREPFAAAAAVQL 199
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 112 SFSFGDVCSWGGTKSSKIDSVWGWASP 192
SFS SW GT S +I++V G SP
Sbjct: 1449 SFSRSRAASWSGTYSEQINAVAGARSP 1475
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 151 KSSKIDSVWGWASPPLRLQLGNARGH-KRMGEGGSPVARGCPTPR 282
+ SKI +W A+ P R + + R H G+GG +A G PR
Sbjct: 759 QDSKIIRLWKKAATPCRAPVSSPRAHGHHQGQGG--MASGGQNPR 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,116
Number of Sequences: 37544
Number of extensions: 244399
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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