Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0573
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      30   0.011
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 0.011
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 297 AIXGXLSALRRHRELCXVVLNVXXRXLXAHRVILSAXXPY 416
           +I      LR   +   V L    R L AHRV+LSA  PY
Sbjct: 17  SITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPY 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 290 MFLRGVGQPRATGDPPSP 237
           M L G  Q   TG PP P
Sbjct: 371 MLLSGRSQKSTTGPPPGP 388


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 209 SCKRSGGEAQPHTESIFDDFVPPHEQT 129
           +C R   EA+P + S     V  H+Q+
Sbjct: 267 TCDRPSDEAEPSSTSKKSGIVRSHQQS 293


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 186 SPTPHGVNL*RFCSTPR 136
           S TP+  N  +FCST +
Sbjct: 442 SVTPYNKNYTKFCSTEK 458


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 116 NEIFTTSHNVEC 81
           + +FTT HN  C
Sbjct: 307 SSVFTTRHNATC 318


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 348 VVLNVXXRXLXAHRVILSAXXPY 416
           V L      L AH+V+LSA   Y
Sbjct: 38  VTLACNEASLKAHKVVLSACSSY 60


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 116 NEIFTTSHNVEC 81
           + +FTT HN  C
Sbjct: 13  SSVFTTRHNATC 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,175
Number of Sequences: 438
Number of extensions: 2291
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)