Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0573
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr...    31   0.30 
At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting...    30   0.70 
At3g55660.1 68416.m06184 expressed protein contains Pfam profile...    29   1.6  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    27   4.9  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    27   4.9  
At1g19470.1 68414.m02425 kelch repeat-containing F-box family pr...    27   6.5  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    27   8.6  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   8.6  
At1g15020.2 68414.m01795 thioredoxin family protein low similari...    27   8.6  
At1g15020.1 68414.m01794 thioredoxin family protein low similari...    27   8.6  

>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
           protein component of the pyruvate dehydrogenase complex
           E3, contains PF|00010 helix-loop-helix DNA-binding
           domain. ESTs gb|T45640 and gb|T22783 come from this gene
          Length = 302

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 136 SWGGTKSSKIDSVWGWASPPLRLQL--GNARGHKRMGE--GGSPV 258
           ++ G+  S +  + G   PP+ LQL  GN   H  MG   GG PV
Sbjct: 30  NFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMGAIGGGGPV 74


>At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting
           partner 3-related contains Pfam profile PF00646: F-box
           domain
          Length = 291

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 145 GTKSSKIDSVWGWASPPLRLQLGNARGHKRMGE 243
           G K+  +D V GW   P+R QL  + G   M E
Sbjct: 195 GRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSE 227


>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 579

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 263 RATGDPP--SPILLWPRALPSCKRSGGEAQPHTESIFDDFVPPHEQTSPKENEI 108
           R+   PP  S IL WP    S ++S G+ +  T +  DDF      T   E E+
Sbjct: 57  RSVSSPPTKSQILGWPLGQGSWRKSSGKMKKKTPTKIDDFGFKRVGTETSEIEL 110


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 282 PRCGTAARXRGSALTHPFVAACVTQLQTQRGRSPTPHGVN 163
           PRC +  R     + +PFV +   Q   Q G  PT +GVN
Sbjct: 458 PRCNSNIRT-DHLMRNPFVNSTDQQAGEQIGDDPTKYGVN 496


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 282 PRCGTAARXRGSALTHPFVAACVTQLQTQRGRSPTPHGVN 163
           PRC +  R     + +PFV +   Q   Q G  PT +GVN
Sbjct: 458 PRCNSNIRT-DHLMRNPFVNSTDQQAGEQIGDDPTKYGVN 496


>At1g19470.1 68414.m02425 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 412

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 314 EXAXYGARMFLRGVGQPRATGDPPSPILLWPRALPSCKRSGGEAQPHTESI 162
           E A +G ++ + G  +   TGD      +W   +   KR GGE     ES+
Sbjct: 342 EMANFGGKLVILGSNKSYVTGDCIGEKGIWCVMIELEKREGGEIWGKVESL 392


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 157 SKIDSVWGWASPPLRLQLGNARGHKRMGE-GGS 252
           S +D   G  +PP+ LQLG+      MG  GGS
Sbjct: 38  SGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGS 70


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 348 VVLNVXXRXLXAHRVILSAXXPYXPRR 428
           V+  V  R + AHRVILSA  P+  ++
Sbjct: 175 VMFYVQGRPIEAHRVILSARSPFFKQK 201


>At1g15020.2 68414.m01795 thioredoxin family protein low similarity
           to FAD-dependent sulfhydryl oxidase-2 [Rattus
           norvegicus] GI:12483919; contains Pfam profiles PF00085:
           Thioredoxin, PF04777: Erv1 / Alr family
          Length = 528

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 257 TGDPPSPILLWP--RALPSCKRSGGE 186
           TGDP  P ++WP  +  PSC  S  E
Sbjct: 387 TGDPKFPKMIWPPKQLCPSCYLSSTE 412


>At1g15020.1 68414.m01794 thioredoxin family protein low similarity
           to FAD-dependent sulfhydryl oxidase-2 [Rattus
           norvegicus] GI:12483919; contains Pfam profiles PF00085:
           Thioredoxin, PF04777: Erv1 / Alr family
          Length = 502

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 257 TGDPPSPILLWP--RALPSCKRSGGE 186
           TGDP  P ++WP  +  PSC  S  E
Sbjct: 387 TGDPKFPKMIWPPKQLCPSCYLSSTE 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,959,039
Number of Sequences: 28952
Number of extensions: 175326
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)