Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0572
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   4.1  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   4.1  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    26   4.1  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   5.4  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   9.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 240  FVAACVTQLQTQRGRSPTPHGVNL*RFCSTPRTNVPKGKR 121
            F AA  +       +SP P+G+      S  +TN P G++
Sbjct: 1110 FGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAPPGRK 1149


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFT 443
           D+V      ++FAH+  L+A S YF++ F+
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFS 197


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 296 FLRGVGQPRATWGSPSPILLWPRALPSCKRSGGEAQPH 183
           F+R  G    TW +PS +L  P AL +   S     P+
Sbjct: 84  FIRYPGTLSKTWKNPSEVLFMPTALLAIATSISNLYPY 121


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 275 PRATWGSPSPILLWPRALPSCKRSGGEAQPHTESIFDDFVPPHEQTSPKENEIFTTSHNV 96
           P   + +P  + L  +ALP  K        HTE      V P E+     N   TT+ ++
Sbjct: 330 PEPNFATPEQLALLEKALPPRKIESAPKNAHTEECVLATVDPTEKVRIDNNVDPTTATSM 389

Query: 95  E 93
           +
Sbjct: 390 D 390


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 165 RFCSTPRTNVPKGKRNI-YNKSQC 97
           R C TP TN+   K+NI Y +  C
Sbjct: 23  RLCFTPPTNLHNNKKNIFYTRYDC 46


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -3

Query: 86  PFNRT--WISRFNVSNVY 39
           PFNR   W+S F++ NVY
Sbjct: 369 PFNREALWLSNFDMENVY 386


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 228 CVTQLQTQRGRSPTPHGVNL*RFCSTPRTN 139
           CV +    R  S TPHG N  R  STP +N
Sbjct: 424 CVKKQMNYREESHTPHG-NTTRKTSTPVSN 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,589
Number of Sequences: 5004
Number of extensions: 47781
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)