Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0572
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 52 2e-07
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 47 9e-06
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 45 4e-05
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta... 45 5e-05
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 44 9e-05
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 44 9e-05
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 42 4e-04
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 41 8e-04
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 41 8e-04
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 40 0.001
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 40 0.002
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 40 0.002
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 38 0.008
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 35 0.054
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 33 0.16
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 33 0.22
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 33 0.22
At2g46260.1 68415.m05752 BTB/POZ domain-containing protein conta... 32 0.29
At1g04390.1 68414.m00429 expressed protein 31 0.87
At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting... 30 1.2
At3g61600.2 68416.m06901 BTB/POZ domain-containing protein conta... 30 1.2
At3g61600.1 68416.m06900 BTB/POZ domain-containing protein conta... 30 1.2
At2g30520.1 68415.m03717 signal transducer of phototropic respon... 30 1.2
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 29 3.5
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 28 6.1
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCY 530
D+ N+A K AH+++L+A SP+F++ F E E+ TEVTI D+E L++F Y
Sbjct: 199 DITFNIAGEKFLAHKLVLAARSPFFKSKFFSEF-EANNTEVTINDLEPKVFKALLQFMY 256
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +3
Query: 351 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCY 530
CD+ V + AH++IL+A SP FRA F G + + + I D+E ++ F Y
Sbjct: 194 CDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSFIY 253
Query: 531 T 533
T
Sbjct: 254 T 254
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +3
Query: 303 RAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTI 482
R LGE + L DV V R +AHR+ L A S FRAMF G E A ++ I
Sbjct: 527 RVYLGEQYV--NNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEI 584
Query: 483 RDVEXXGHGQLVEFCYTAHI 542
+++ ++ F YT +
Sbjct: 585 PNIKWEVFELMMRFIYTGSV 604
>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
similarity to gb|AJ000644 SPOP (speckle-type POZ
protein) from Homo sapiens and contains a PF|00651
BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
from this gene;supported by full-length
Length = 326
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +3
Query: 321 LSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXX 500
LS + L DV+++ A+ L AH+ ILSA S F++MF +L E ++ + I D+
Sbjct: 151 LSRMLEESILTDVIIHTADGTLSAHKAILSASSTVFKSMFHHDLMEKESSTIHIDDMSRE 210
Query: 501 GHGQLVEFCYTAHIVVEE 554
L+ + Y +I EE
Sbjct: 211 SCMALLSYLY-GNITQEE 227
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCY 530
DV +VA K AH+++L+A S +FR+MF L E+ ++V I D+E L+ F Y
Sbjct: 206 DVTFDVAGEKFQAHKLVLAARSQFFRSMFYNTLAENN-SDVVISDLEPKVFKALLHFMY 263
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCY 530
D+ +N ++ + AHR +L+A SP FR+MF +L E +E+ + D+ + + Y
Sbjct: 165 DITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQAFLSYIY 223
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Frame = +3
Query: 342 RELCDVVL-----NVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGH 506
R DVVL N + + AH+ +L + SP F+AM E+ ES + + I DV
Sbjct: 61 RSFTDVVLIASEDNAGSPPIPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDAL 120
Query: 507 GQLVEFCYTAHIVVEESNVXXXXXXXXXXXXXEIQDVCCEFLKRQL 644
V + YTA ++E ++ C FL +L
Sbjct: 121 RTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKL 166
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 312 LGELSALRRHRELCDVVLNVANRKLF--AHRVILSACSPYFRAMFTGELXESRATEVTIR 485
+G+L L E D+ + +++ L +H+VILS S F MFT + ES ++ + +
Sbjct: 338 VGKLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLT 397
Query: 486 DVEXXGHGQLVEFCYTAHIVVEES 557
DV ++ F Y+ + +E++
Sbjct: 398 DVSPEAFKAMMNFMYSGELNMEDT 421
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 312 LGELSALRRHRELCDVVLNVANRKLF--AHRVILSACSPYFRAMFTGELXESRATEVTIR 485
+G+L L E D+ + +++ L +H+VILS S F MFT + ES ++ + +
Sbjct: 338 VGKLVKLYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLT 397
Query: 486 DVEXXGHGQLVEFCYTAHIVVEES 557
DV ++ F Y+ + +E++
Sbjct: 398 DVSPEAFKAMMNFMYSGELNMEDT 421
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCYT 533
DV+ V R + AHRVILSA SP+F+ F E + R + + L+ F Y+
Sbjct: 174 DVMFYVQGRPIEAHRVILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFYS 233
Query: 534 AHIVV 548
+ +
Sbjct: 234 DRLEI 238
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 348 LCDVVLNVANRKLFAHRVILSACSPYFRA 434
L DV + V R + H+VIL++ S YFRA
Sbjct: 337 LADVCVRVDKRNFYCHQVILASRSEYFRA 365
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 300 PRAILGE-LSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEV 476
P + LG+ L L + CDVV V AH+++L+ SP F A G L + +
Sbjct: 185 PVSNLGQQLGNLLESGKGCDVVFQVDGETFNAHKLVLATRSPVFNAQLFGPLGDRNTKCI 244
Query: 477 TIRDVE 494
TI D+E
Sbjct: 245 TIEDME 250
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 348 LCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFC 527
+ DV + ++ +AH++ L A S FRAMF G E A V I ++ +++F
Sbjct: 539 MSDVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFI 598
Query: 528 YTAHI 542
Y+ I
Sbjct: 599 YSGRI 603
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMF---TGELXESRATEVTIRDVEXXGHGQLVEF 524
D+ NV+ K AHR++L+A SP F + F TGE E R EVT D+E L+ +
Sbjct: 217 DITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGE--EDRDIEVT--DMEPKVFKALLHY 272
Query: 525 CY 530
Y
Sbjct: 273 IY 274
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCY 530
DV V AH+++L+A S FRA G L + I DV+ L+ F Y
Sbjct: 203 DVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAPIFKMLLHFIY 261
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +3
Query: 276 LSHTSEKHPRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTG 446
+S+ E L L+ L + DV +V R + AHR IL+A S +FR F G
Sbjct: 1 MSNLEESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG 57
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 276 LSHTSEKHPRAI-LGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMF 440
+S+T E+ +++ L L+ L + DV +V R + AHR IL+A S +FR F
Sbjct: 1 MSNTFEESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFF 56
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 644 QLTLEELAAHVLDLLQLQQARSREQGLHVTLLDDD 540
Q+T E LAA V+D Q+ + S+E+ LH+ DDD
Sbjct: 1244 QVTKEGLAARVVDRQQVHRTISKEEMLHLFEFDDD 1278
>At2g46260.1 68415.m05752 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 32.3 bits (70), Expect = 0.29
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 258 SPGGARLSHTSEKH-PRAILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRA 434
+PGG L E A+ G+ A D V ++L IL+A SP+F
Sbjct: 111 APGGDNLDDEGEAMVEEALSGDDDASSEPNWGIDCSTVVRVKELHISSPILAAKSPFFYK 170
Query: 435 MFTGELXESRATEVTIRDVEXXGHGQLVE 521
+F+ + ES VT+R + G L+E
Sbjct: 171 LFSNGMRESEQRHVTLR-ISAQEEGALME 198
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 390 AHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGHGQLVEFCYT 533
+HRVILS+ Y RA+F + ES + + V G +LV + Y+
Sbjct: 683 SHRVILSSGCEYLRALFRSGMQESHLDRLNV-PVSWLGLTKLVSWFYS 729
>At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting
partner 3-related contains Pfam profile PF00646: F-box
domain
Length = 291
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 154 GTKSSKIDSVWGWASPPLRLQLGNARGHKRMGE 252
G K+ +D V GW P+R QL + G M E
Sbjct: 195 GRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSE 227
>At3g61600.2 68416.m06901 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 351 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIR--DVEXXGHGQLVEF 524
C V+ V ++L IL+A SP+F +F+ + ES VT+R E +L+ F
Sbjct: 147 CSTVVRV--KELHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNF 204
Query: 525 CYTAHIVV 548
Y+ + V
Sbjct: 205 MYSNAVSV 212
>At3g61600.1 68416.m06900 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 351 CDVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIR--DVEXXGHGQLVEF 524
C V+ V ++L IL+A SP+F +F+ + ES VT+R E +L+ F
Sbjct: 147 CSTVVRV--KELHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNF 204
Query: 525 CYTAHIVV 548
Y+ + V
Sbjct: 205 MYSNAVSV 212
>At2g30520.1 68415.m03717 signal transducer of phototropic response
(RPT2) identical to RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112
Length = 593
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELXESRATEVTIRDVEXXGH--GQLVEFC 527
DVV+ V H+ +L A S Y R + E +S T + + D+ + +FC
Sbjct: 33 DVVVEVGEANFSLHKFMLVAKSNYIRKLIM-ESKDSDVTRINLSDIPGGPEIFEKAAKFC 91
Query: 528 YTAHIVVEESNV 563
Y + + NV
Sbjct: 92 YGVNFEITVQNV 103
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 354 DVVLNVANRKLFAHRVILSACSPYFRAMFTG--ELXESRATEVTIRDVEXXGHGQLVEFC 527
DV +NV + H+ LS S Y + TG EL S +T + FC
Sbjct: 68 DVFVNVGGTRFHLHKDPLSK-SGYLKRHLTGVNELTLSPPLNITAETFSL-----VAGFC 121
Query: 528 YTAHIVVEESNV 563
Y AHI + SNV
Sbjct: 122 YGAHIELTPSNV 133
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 145 SWGGTKSSKIDSVWGWASPPLRLQL--GNARGHKRMG 249
++ G+ S + + G PP+ LQL GN H MG
Sbjct: 30 NFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMG 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,208
Number of Sequences: 28952
Number of extensions: 280032
Number of successful extensions: 801
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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