Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0571
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 33 0.26
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 32 0.46
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 3.3
10_08_1048 - 22553676-22554866 29 4.3
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 28 5.7
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 28 5.7
06_01_0931 + 7192519-7194075 28 7.5
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 28 7.5
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075 27 9.9
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 27 9.9
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 27 9.9
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 32.7 bits (71), Expect = 0.26
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 389 ERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQTEGGRIV--XAAHSDVFNRNDYSAGGKL 562
E + ++ LAQ+ Q+ QLQHA SGL GG + AA D N N GG
Sbjct: 715 EAKNTNNRVLAQQQQQQ-QLQHAPANSGL---ASGGTAITGSAASGDHMNNNGAVKGGTP 770
Query: 563 NLFRSPSSSLD 595
+ PSS ++
Sbjct: 771 MVTTGPSSVIN 781
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 398 GVRDQELAQRHSQRAQLQHAGRRSGLHVQTEGGRIVXAAHSD----VFNRNDYSAGGKLN 565
G D EL +R Q A RRS H + +G R +HS VF+RN+ GG L+
Sbjct: 118 GADDAELEERIIQHLAAAAAMRRSHRHGRRDGHRSRSGSHSRPQIVVFSRNEAIPGGSLH 177
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 350 CDAELLPEAGNAGPGQAQPV 291
C A LLPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
>10_08_1048 - 22553676-22554866
Length = 396
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 472 STPPPSVLKLGXLGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 293
ST PP +L A E L+ A+R+ + N L P P P + + RL+P
Sbjct: 47 STAPPLLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYSRLAP 106
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 153 SVRVHCEAAGLSPRTCRHVST 91
S+R+HC A L+PR CR T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 210 AEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 100
A V++ AG R GG GG V VH AA SP T RH
Sbjct: 17 AASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52
>06_01_0931 + 7192519-7194075
Length = 518
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -3
Query: 487 CLNM*STPPPSVLKLGXLG-MALGEFLIANALALRSWLLLW-NKLTLPATPSCSPKPGMR 314
C + +PP L L A ++ +ALR+ +L W ++L+LP SP
Sbjct: 64 CAALAFSPPAVAADLSSLPPSASSPLVLVPNVALRTAILNWCDRLSLPYPAPLSPDTARD 123
Query: 313 VPVRLSPCP 287
V RL P P
Sbjct: 124 VVRRLMPSP 132
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 219 PDGAEHVLVVAGERDLQGGPGGSVRV 142
PDGA+ V+ V L G P GS RV
Sbjct: 101 PDGADAVVQVEDTEQLAGAPDGSKRV 126
>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
Length = 479
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 201 VLVVAGERDLQGGPGGSVRVHCEAAGLSPRTC 106
V +VAGE Q GP S V C+ AG + C
Sbjct: 388 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPC 419
>11_06_0364 - 22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 201 VLVVAGERDLQGGPGGSVRVHCEAAGLSPRTC 106
V +VAGE Q GP S V C+ AG + C
Sbjct: 1171 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPC 1202
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 449 QHAGRRSGLHVQTEGGRIVXAAHSDVFNRNDYSAGGKLNLFRS-PSSS 589
+ GRR+ + + G+ V A DV N+ SAG K ++ S P+SS
Sbjct: 641 ERTGRRNTAANKRQHGKQVDTAQHDVSKSNEASAGAKPFIWGSIPNSS 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,477
Number of Sequences: 37544
Number of extensions: 321167
Number of successful extensions: 1016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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