Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0571
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.8  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   3.7  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   4.9  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 454 RWAAEWTTCSNRRWAHR 504
           +W AE  T  + RWAHR
Sbjct: 880 QWDAEADTSRHTRWAHR 896


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 445 TSTRWAAEWTTCSNRRWAHR 504
           T  RW  EW    + RW +R
Sbjct: 850 TMERWQREWDESVHGRWTYR 869


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 469 TPPPSVLKLGXLGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 293
           TP PS        +++GEF +       S L   +    P++PS    P  R    +SP
Sbjct: 35  TPSPSSSSAAAAVVSVGEFTLGPGRTYASALSPSSSSASPSSPSSVASPNSRAS-NMSP 92


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,113
Number of Sequences: 2352
Number of extensions: 10050
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)