Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0571
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   0.84 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 348 AGKVNLFHNNNHDLSAKAFAIRNSPSAIPNXPNFNTL 458
           +G++N+  +++HD S + +A  + P  I + PN + L
Sbjct: 68  SGQLNII-SSDHDDSDEEYAANSQPPRITSVPNTSRL 103


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 LALXXVNGHGLSLTGTRIPGFGEQL 341
           LA+  +N H   + GTR+PG    L
Sbjct: 292 LAVVTLNLHHRGVRGTRVPGIVRSL 316


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 427 ALGEFLIANALALRSWL 377
           ALGEF++   L LRS L
Sbjct: 276 ALGEFVVVKVLDLRSQL 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,490
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)