Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0571
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    28   4.8  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    28   4.8  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    28   4.8  
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    28   4.8  
At1g76660.1 68414.m08920 expressed protein                             28   4.8  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   4.8  

>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 227 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 90
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 227 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 90
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 227 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 90
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
            PF00400: WD domain, G-beta repeat; similar to WD-repeat
            protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
            sapiens]
          Length = 825

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
 Frame = +3

Query: 351  GKVNLFHNNNHDLSAKAFAIRNSPSAIPNXPNFNTLGGGV-----DYMFKQKVGAS--XX 509
            GK++  H NN    +   A  N P+ + +  N  T+  G+     +  F  +V A+    
Sbjct: 707  GKISNNHTNNSPEQSSFTANNNPPTPVNDPTNNKTVTNGIISSATNRYFFDRVSATWPEE 766

Query: 510  RRTLTXSTGMTTRPAVS*TCSDLRPVRSTSTPASRSLIRLFTDLRGE 650
            +  L       T P VS   S+++ V +  + ++ S++ +   LRGE
Sbjct: 767  KLLLAAKNRARTSPRVSVDMSNIQ-VNTKPSASAWSMVIVTGSLRGE 812


>At1g76660.1 68414.m08920 expressed protein 
          Length = 431

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 479 VQTEGGRIVXAAHSDVFNRNDYSAGGKLNLFRSPSSSLD 595
           V   GGR+  +  SDV+  N Y  G +    RSP   ++
Sbjct: 255 VPQNGGRLSVSKDSDVYPTNGYGNGNQNRQNRSPKQDME 293


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 377 QPRPERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQTEGGRIVXAAHSDVFNRNDYSAGG 556
           Q R  RQ V   + +Q+ S+ +  Q +    G+   +EGG     ++ + +   D S+G 
Sbjct: 682 QARERRQEVNSNQTSQKTSRTSGSQLSST-FGVPEISEGGFNKRDSYQNDYQEEDDSSGS 740

Query: 557 KLNLFRSPSSS 589
              + RSP SS
Sbjct: 741 GTVVIRSPRSS 751


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,726
Number of Sequences: 28952
Number of extensions: 217056
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)