Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0570
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    26   5.4  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.4  

>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 58  AGNVADDYEDLGSERETDMCCRDHD 132
           A NVAD   D+G   E+ M C D +
Sbjct: 48  ASNVADQTTDIGINSESAMSCNDQE 72


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 302 CPQCIEINNSDAFGCGLFASWRHF 231
           CP C+E +  +     LFA WR+F
Sbjct: 133 CPLCMEQHCIELLTYQLFAKWRNF 156


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 341 CAFHNRIILPVAFCPQCIEINNSDAFGCGL 252
           CA       PV FCP  ++ NN   F C L
Sbjct: 513 CALSRMRGRPVGFCPLQLDFNNWPKFLCCL 542


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 187 LSWSGYSWFLPPV*GQDSCRDPGNTCLSPVRILGLRSRLPRYQPRTISYNSN 32
           L WSGY   +  +   ++ + P   C+     + + + +  Y  R I  +SN
Sbjct: 272 LDWSGYRGAIQDIFASNAAKFPDRECIVVTPSVTIDAPVTSYTYRQIDESSN 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,734
Number of Sequences: 5004
Number of extensions: 48546
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)