Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0570
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    32   0.34 
11_03_0200 + 11560278-11560549,11561124-11561205,11561238-115612...    28   7.4  
08_01_0168 - 1385439-1385979,1386081-1387438                           28   7.4  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   7.4  

>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 276 VIYFNALGTKCYRKDYPIVKCTMRGGWFKRKCLRY 380
           +IYF    T CY+  YP   C +R GW  R+ + Y
Sbjct: 275 LIYFMMAPTLCYQPSYPRTSC-VRKGWLIRQIILY 308


>11_03_0200 +
           11560278-11560549,11561124-11561205,11561238-11561297,
           11565714-11565801,11565935-11565942,11566431-11566522,
           11567269-11567275
          Length = 202

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 34  WNCTKWCGAGNVADDYEDLGSERETD 111
           W CT  C +GN  DD    GS R T+
Sbjct: 159 WICTCACASGNQMDDTLTTGSIRSTE 184


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 87 VFVVVCHVTSPAPFRTIPINYSRIST 10
          +F  VC++  PAP   +  NYS  S+
Sbjct: 15 IFFSVCYLQPPAPVAALSFNYSNFSS 40


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 260 SQTHRSYLFQCTGDKMLQEGLSDCEMHNARRLVQEEMLTIRRR 388
           S + +S LF+CTGD   +E     E  + +  + +E    RRR
Sbjct: 157 SFSEKSQLFRCTGDSKKKEAKGQLESADGKGEINKEEEKERRR 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,233
Number of Sequences: 37544
Number of extensions: 328252
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)