Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0570
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)                     29   3.3  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
          Length = 1002

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +1

Query: 43  TKWCGAGNVADD-YEDLGS--ERETDMCCRDHDNCPDLILAGETKNNLTNSAFYTRLSCE 213
           TK    GN+ DD Y D+ S      + C    DN   L L    K+N +++AF T ++ +
Sbjct: 331 TKNRSKGNLHDDDYVDMSSLPHPPLEWCDDQEDNQTKLDLWQTGKSNKSSAAFSTTITNK 390

Query: 214 CDEGFRKCLHDANRPQPNASELFISMHWGQNA 309
              G  K +     P+  +S    S+H   NA
Sbjct: 391 QLTGMAKFVKRKGLPRETSSS-SNSLHMSANA 421


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
 Frame = +1

Query: 205  SCECDEGFRKCLHDANRPQPNAS-----ELFISMHWGQNAT----GRIIRL*NAQC-AEV 354
            SCEC   F+     A  P P AS      +F+S  W    T    GR +R    +C  +V
Sbjct: 1313 SCECTLSFKDSTDSAKAPSPVASPSSSPPVFLSYQWDMQETALELGRQLREAGIECWMDV 1372

Query: 355  GSRG 366
            G  G
Sbjct: 1373 GQMG 1376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,313
Number of Sequences: 59808
Number of extensions: 392619
Number of successful extensions: 1183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)