Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0570
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical
           protein F54E4.4 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +1

Query: 1   GRSSRNSTIINWNCTKWCGAGNVADDYEDLGSERETDMCCRDHDNCPDLILAGETKNNLT 180
           G  SRN   +  NC K CG  + A       +    D C   +  C    + GE ++N  
Sbjct: 269 GECSRNPFWMKLNCAKTCGTCDCA------STTTTADKCKDYYKECSFWAVLGECQSN-- 320

Query: 181 NSAFYTRLSCE 213
              FY R +C+
Sbjct: 321 --PFYMRPNCQ 329


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 31  NWNCTKWCGAGNVADDYEDLGSERETDMCCRDHDNCPD 144
           N+ C  WCG G   +  + +      D CC  HD C D
Sbjct: 46  NYGC--WCGIGGSHEPVDGI------DECCMHHDKCYD 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,243
Number of Sequences: 27780
Number of extensions: 291272
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)