Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0565
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   1.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.5  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   5.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.5  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.5  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 144 ADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSSGCKAPRTSSGIVSR 317
           A  +S+   S L+  +N+G  +   +  L+  +K   W+   S   +A R  S  +S+
Sbjct: 39  ASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWANKLSKSLQARRRKSESISK 96


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 258 STPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGP 437
           STP S+    P + S   SRLSS L+      S+   ET      +     PTG++  G 
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQGS 784

Query: 438 V 440
           V
Sbjct: 785 V 785


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 331  KCELNRETIPDDVLGALHPELVGVLQQFIL 242
            K +L +E +P+DVL A  P+   V+ Q+I+
Sbjct: 1080 KADLEKE-LPEDVLNAEFPDGTDVITQYIV 1108


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 245  DELLEYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYRRDGLAFTLSD 397
            DE+ EY Y+  M     + + CF     LILA   +K+  +   +A +L D
Sbjct: 997  DEISEYLYRRLMDEESSVKKTCFMTLAFLILA-GQIKVKGQLGIMARSLED 1046


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 374 GLAFTLSDNGGVAYGDSKDRTSSRVSWKFIPLWENNKVYFKIE-NTSANRTWH*KSELTE 550
           GL F   +  G+  G +KD  S  V W  + +  +++  F I+  T++ +    +   TE
Sbjct: 103 GLGFYFRNMDGLTKGVTKDFNSYFVDW--LGMGNSSRPPFDIKGQTASEKVEETERFFTE 160

Query: 551 MATTWLTG-SLTSMVL 595
              TW  G  +  M+L
Sbjct: 161 SLETWRIGHGIEKMIL 176


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +3

Query: 147 DYDSAVERSKLIYTDNKGELITN--VVNNLIRNNKMNCWSTPTSSGCK--APRTSSGIVS 314
           ++   +E+ KLI   NK     N   V   I   ++  +     +G +  +P  S   + 
Sbjct: 642 EFADVIEQDKLIEIKNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHID 701

Query: 315 RLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGPVQ 443
            L S++  L      C GE + L+H    A +  G  KT  VQ
Sbjct: 702 LLFSNMKHL--FFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQ 742


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 57  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSK 176
           C  A   YAD      +  +E L +D+ I D+D+  E  K
Sbjct: 533 CTIAGVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLK 572


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 467 LWENNKVYFKIENTSANRTWH*KSELTEMATTWLTGSLT 583
           LW N+ VY+ + ++S   T      +T  +TT  T S T
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTSTT-ATASCT 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,938
Number of Sequences: 5004
Number of extensions: 45644
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)