Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0565
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.80
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 30 1.9
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 29 3.2
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179... 29 4.3
06_03_0001 - 15276668-15276853 28 5.6
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 27 9.9
05_06_0168 - 26115947-26116007,26116109-26116398,26116934-261172... 27 9.9
03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464 27 9.9
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 385 YIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLL----QDREH*RKQNLALKVRTNRN 552
YIE Q +Q+Q Q+ Q H + QQ LL Q ++ ++Q + + +R+
Sbjct: 77 YIETQQAKAEHQKQQQQQYHHQQHQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136
Query: 553 GDHMAYGV-ANFDG 591
G H+ G+ + F G
Sbjct: 137 GSHLFNGITSGFSG 150
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 117 EHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSS 275
EH+ + + D A LI D KG+ + ++ + M+C++ P S
Sbjct: 744 EHVIGETSSEEEDDAQNNLALINKDVKGQTMADIFQQVFNATSMDCFTLPVRS 796
>11_03_0177 +
11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +3
Query: 165 ERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSSGCKAPRTSSGIVSRLS 323
E++KLI+ D EL TNV+ ++ N TP K PR SS IV ++S
Sbjct: 581 EQTKLIFRDEHNELPTNVIAGPAIPSEKN-QPTPLEDN-KGPRDSS-IVDKIS 630
>07_03_0200 -
15016084-15016342,15016814-15016869,15016963-15017960,
15018707-15018768,15019242-15019274,15019697-15019881,
15020033-15020133,15020783-15020795,15021216-15021319,
15021593-15021693,15022773-15022849,15022965-15023021,
15023158-15023268,15023803-15023859
Length = 737
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 541 FGLSMPSSVCASVLYLEVDLVVLPQRNEFPADS*TGPVFAVPVGNPAIVAQCKSETVSPV 362
FGLS SSV A ++ + R+ F A GP +G+ A C S V P
Sbjct: 188 FGLSGESSVTAREMWGTLSQDGCFDRDNFSA----GPSMPSSLGDTVCAAVCASTWVEPH 243
Query: 361 HKLNIVFS 338
+ +VFS
Sbjct: 244 GRCTVVFS 251
>06_03_0001 - 15276668-15276853
Length = 61
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 317 PGNNPGRCPRSLASRAGRRTPA 252
P PGRCP SL S + R PA
Sbjct: 4 PYAEPGRCPASLPSSSSRTEPA 25
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 305 DCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSR 445
D V F +I A+ Y DG+ + D G DS+D+TS +
Sbjct: 45 DTVHVSFVVIKADT--PWHYSEDGVDLVVKDPNGAQVRDSRDKTSDK 89
>05_06_0168 -
26115947-26116007,26116109-26116398,26116934-26117234,
26117333-26117403,26118067-26118174,26118700-26118774,
26118901-26118959,26119119-26119179,26120979-26120990
Length = 345
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 326 TLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSRVSWKFIPLWENNKVYFKIEN 505
++ ++ V+L+ + DG T +D G D+ +R P+ +VY+++EN
Sbjct: 63 SIAASQEVVELVDKYDGECVTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLEN 122
Query: 506 TSANRTWH*KS 538
N + KS
Sbjct: 123 FYQNHRRYVKS 133
>03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464
Length = 209
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 230 DTKQQDELLEYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGV 409
DT+++ E+ E A G +V D FP E A +KL RD A + G
Sbjct: 87 DTQERKEITEKAQLTIFYGGSVVVFDDFPAE----KAGELMKLAGSRDSTAAAAVSDAGA 142
Query: 410 AYG 418
A G
Sbjct: 143 AAG 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,416
Number of Sequences: 37544
Number of extensions: 309587
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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