Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0565
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.8  
SB_58646| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 123 LYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSSGCKAPR 293
           +Y  +I +   + +       TD +  L+  ++N  IR  KM+ W  P+S   K  R
Sbjct: 211 IYKKIIGSRQSAGIRLQGSRITDRRITLVREIING-IRTVKMHAWEKPSSDIVKRTR 266


>SB_58646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 364 QARRSRFYIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLLQDREH*RKQNLALKVRT 543
           +A ++   I+R WR C   Q +  +  +  ++ +A+ E + L+  R    K N  LK R 
Sbjct: 30  KAMKNSMAIKRSWRACWIRQHKIFRVDNCSKVKNALNEGKALIASR---MKHNRDLKQR- 85

Query: 544 NRNGDHMAYGVANFD 588
            RN D        FD
Sbjct: 86  RRNVDDDGKKTMGFD 100


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 99  FNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWS 260
           F+ ++       V+ A Y + V R++L   + K  L+ +V+  +  NN+M C++
Sbjct: 228 FSPVIQARYVRIVVQAWYTNIVMRAELYGCEGK-RLVEHVIRKVTGNNQMQCYA 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,206
Number of Sequences: 59808
Number of extensions: 352477
Number of successful extensions: 1178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)