Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0564
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 29 0.45
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 29 0.45
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.59
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 28 1.0
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 27 3.1
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 27 3.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 3.1
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 4.2
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 25 7.3
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 7.3
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.3
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 9.6
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 25 9.6
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.45
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +2
Query: 266 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 445
E+ +K D E+ D + T E+ P +D+ K+H+ VE KH
Sbjct: 121 ERCRKMASDASEEKDRKIEEGELTSEEEKEPIQDL---RKSHKR--KSVEKSSVPNKKHK 175
Query: 446 TTEEKNPLPPIEAIEAEKE 502
+++P P IE +E ++E
Sbjct: 176 AERKRSPSPKIEILEDDEE 194
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 403 GRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQFLNGIENFDP 540
G RTLR+D+ + R+E A D++Y E + N +++FDP
Sbjct: 782 GAIRTLRKDARFIARERRQEQRAKDQAY--NEKMRKLENRLQHFDP 825
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 271 DPEVF-IRRYREV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 447
DPE++ +RR P + D+ ++ + R G R RT+R DEA
Sbjct: 55 DPELYGLRRSGRTRSNPGR-YVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAES 113
Query: 448 DGRKESTAPDRSY 486
+ES + D SY
Sbjct: 114 VTSEESESDDSSY 126
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +1
Query: 376 SGESPP----EPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQFLNGIENFD-P 540
+G PP EP+ S+ L +D + ++ K +G ++ +NG +N + P
Sbjct: 104 NGIKPPKPQFEPVANSQVLNKDVNNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMP 163
Query: 541 TKLKHTXTCEKNPLPTXDVIEAREIS 618
K + T E+N PT + +E S
Sbjct: 164 PKRRKT---EENKKPTKSALPKKEAS 186
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 425 KTQMKHTTTEEKNPLPPIEAIEAEKEKNNS*TASRTSI 538
K+ K TT+ E+ P PP I KEK+ + S SI
Sbjct: 91 KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 425 KTQMKHTTTEEKNPLPPIEAIEAEKEKNNS*TASRTSI 538
K+ K TT+ E+ P PP I KEK+ + S SI
Sbjct: 91 KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Frame = +2
Query: 335 TQEKNPLPDKDVVAAEKAHQNL-----------LDGVEHFDKTQ----MKHTTTEEKNPL 469
T+++NP D + AE+ H NL ++ H +K ++ E+N
Sbjct: 373 TKQENPEEDMQIKDAEE-HSNLESTPAAQQTSEVEANNHQEKPSSLPAVEQINVNEENNT 431
Query: 470 PPIEAIEAEKEKNNS 514
P E +E EKE+NN+
Sbjct: 432 PETEGLEDEKEENNT 446
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 430 SDEAHDDGRKESTAPDRSYRSGEGKEQFLNGIENFDPTKLKHTXTCEKNPL 582
SD+ D G + +R SGE +E+F N D T +PL
Sbjct: 174 SDDTGDHGSVDELESEREGNSGEEEEEFHGFESNSDEFHQPETKPIRMDPL 224
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/45 (22%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 404 DGVEHFDKTQMKHTTTEEKNP-LPPIEAIEAEKEKNNS*TASRTS 535
D +E ++ ++T+ E+++ + P++A++ + +NN A T+
Sbjct: 733 DTIEEANEPVQENTSEEQEDTKMQPVDAVDEQPSENNQTAADATN 777
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 374 RQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 264
+QR+ PE S PE+ + +N ++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 275 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 361
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 3 PARTLARALSIQSQSDRVAECTNLLSPSSSKIY 101
PART A + +AE NL+ P S + Y
Sbjct: 503 PARTAVEAKESEHDRSLIAEGYNLVKPHSHRSY 535
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 422 DKTQMKHTTTEEKNPLPPIEAIEAEKEKNNS 514
D+T++KH + KN P E+ +++K + S
Sbjct: 299 DRTEIKHMYEKSKNLAPMSESSDSDKTVSTS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,106
Number of Sequences: 5004
Number of extensions: 52197
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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