Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0561
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 35 0.009
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.34
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.78
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 4.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 7.3
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 7.3
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 9.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.6
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 9.6
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 35.1 bits (77), Expect = 0.009
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 61 MPTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 240
+PT S TP S TTA+S +T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 241 STP-TSLDA 264
STP TS+++
Sbjct: 470 STPLTSVNS 478
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +1
Query: 106 FTTASSLPTTTM---PLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTS 255
+ T+S LPT+++ PL AN +T T A S+ +S NS TT +A STP S
Sbjct: 409 YNTSSVLPTSSVSSTPLSSANSTTAT-SASSTPLSSVNS--TTATSASSTPLS 458
Score = 30.3 bits (65), Expect = 0.26
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 91 NSKTIFTTASSLPTTT---MPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTS 255
+S + T+S LP++T PL AN +T T A S+ ++ NS TT +A STP S
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTAT-SASSTPLTSVNSTTTT--SASSTPLS 325
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 106 FTTASSLPTTTM---PLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTP 249
+ T+S LPT+++ PL AN +T T A S+ ++ NS TT +A STP
Sbjct: 523 YNTSSVLPTSSVSSTPLSSANSTTAT-SASSTPLTSVNS--TTATSASSTP 570
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 61 MPTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRT 174
+PT S TP S TTA+S +T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 29.9 bits (64), Expect = 0.34
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 94 SKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSLDARLQ 273
S T +++S+ P+TT ++ S+ + +KSS S +S ++ T TS +
Sbjct: 130 SSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTS--HKSS 187
Query: 274 GYRPGVLP 297
YRP V P
Sbjct: 188 SYRPTVFP 195
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.7 bits (61), Expect = 0.78
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 81 SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRN--NKMNCMEYA 248
++ KL L N+I++ SK++ E KKS+ + N VNK+ +N N + + A
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQA 198
Query: 249 YQSGCKA 269
+ G KA
Sbjct: 199 REQGSKA 205
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 478 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKCEL 302
L +LP +++PAD ++ + G +VVA S T VH ++ V C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLT---VHGISYVVDTGYCKL 788
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 93 LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 224
LE+D + ++ + A+ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 61 MPTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 240
+PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1147 LPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTAT 1204
Query: 241 STPTSLDA 264
T+ A
Sbjct: 1205 EVQTTTGA 1212
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 64 PTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TN 210
P PQ+PTP+ T+ AS + MP ST + A++ S N
Sbjct: 137 PAIPQNPTPSDHTVGEWASKGTSGVMP----GASTAAKEARNGVTSMDN 181
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 448 EVRSSVGEQQGLLQDCEHSAYQYLTLSVKTTPTQNHMAYGVNSVEGFKAQWTLQPAKYDN 627
E + V +QQ L + ++ YL +++ TP++ + +N K + Q K D+
Sbjct: 41 EPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRKQKKKNDD 100
Query: 628 D 630
D
Sbjct: 101 D 101
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 30 VILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDN 140
V+L LFV L+ + ++ S L+DD + S + Y N
Sbjct: 13 VVLLLFVVFLWLISSFLTSSLLDDDNFFSPFLITYIN 49
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 66 NGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 239
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 DLR-GQEERSHHKCRKQTHTKQQDEL 235
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,177
Number of Sequences: 5004
Number of extensions: 41688
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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