Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0561
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0232 + 21559467-21559532,21559586-21560200                       29   2.5  
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    29   2.5  
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592           29   4.3  
03_03_0003 + 13631664-13632641                                         28   7.5  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   7.5  
11_06_0202 - 21184217-21184503,21184622-21184982                       27   9.9  
05_06_0110 + 25632514-25632834,25633200-25634039                       27   9.9  

>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 79  SPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYET 222
           +P P ++T    ASS P  T P +  +R  R RRA+++Q    +S  T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186


>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +1

Query: 382 QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHSAYQYLTLSVKTTPTQ-NHM 558
           +Q + Q  L   +GQ+E+ + L++ S +  + G + DC +S  +     V++   + N +
Sbjct: 99  RQNKLQEALDLLKGQEETSAILQLESQIYYRLGRMNDCMNSYEKLQKFKVESMDLKINII 158

Query: 559 AYGVNSVEGFKAQWTLQPAKYD 624
           A  V +    + Q T++  K D
Sbjct: 159 AALVAAGRASEVQATMKAQKVD 180


>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
          Length = 371

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 235 AWSTPTSLD----ARLQGYRPGVLPC*VHTYF 318
           AWS PTS+D    AR+Q  RP VL      YF
Sbjct: 186 AWSDPTSIDHHPNARVQARRPSVLVGNARLYF 217


>03_03_0003 + 13631664-13632641
          Length = 325

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 418 AIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFG----ENKC-ELNREALPDDILGALHPD 254
           A A GKS + ++ IA+R    V    ++ V  G     NK  E  R  +P  +LG LHPD
Sbjct: 23  ATATGKSKLAIS-IAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHHLLGVLHPD 81


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 496 EHSAYQYLTLSVKTTPTQNHMAYGVNSVEGFKAQWTLQPAKYDND 630
           EH     L  + +T PT N   Y  ++ +G +  W  Q  K D D
Sbjct: 141 EHEHSGSLDDTDRTRPTNNDNEYASSANDGAEGSWKSQKKKRDKD 185


>11_06_0202 - 21184217-21184503,21184622-21184982
          Length = 215

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 64  PTEPQSPTPNSKTIFTTASSLPTTTMP 144
           P+ PQ+P P+S   FT+ S LP    P
Sbjct: 159 PSLPQAPKPSSPPPFTSPSPLPPPPPP 185


>05_06_0110 + 25632514-25632834,25633200-25634039
          Length = 386

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 37  CVFSWRLY-MPTEPQSP-TPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKS 189
           C +S RL  +P  P SP +P S  I  + S       P KKA +S + +   S
Sbjct: 185 CSWSSRLMVLPPPPASPPSPASAVISPSESGTAAPAFPAKKAAKSAKKKDGPS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,504
Number of Sequences: 37544
Number of extensions: 267201
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)