Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0561
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     33   0.27 
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          31   0.83 
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   1.4  
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   3.3  
SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   29   3.3  
SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)                    28   5.8  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             28   5.8  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +1

Query: 58  YMPTEPQSPTPN--SKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR* 231
           Y PT   +PTP+  S T +T+ +S  +TT      + ++ T    ++  + T SY +T  
Sbjct: 134 YTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTST-- 191

Query: 232 TAWSTPTS 255
           T++++ TS
Sbjct: 192 TSYTSTTS 199



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +1

Query: 58  YMPTEPQSPTPN--SKTIFT-TASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR 228
           Y PT   +PTP+  S T +T T S  PT +     +  ST +  + +S  S T SY +T 
Sbjct: 116 YTPTPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTS-TPSYTST- 173

Query: 229 *TAWSTPTS 255
            T++++ TS
Sbjct: 174 -TSYTSTTS 181


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 73  PQSPTPNSKTIFTTASSL-PTTTMPLKKAN---RSTRTRRAKSSQMS*TNSYETTR*TAW 240
           P S +  S T +T  SSL  +   P+  +N    S+R+     S+ S  ++Y+    T W
Sbjct: 247 PASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSRSTDYSMSRYSNNDAYDRATPT-W 305

Query: 241 STPTSLDARLQGYRPGVLP 297
           S P S   RL   + GV+P
Sbjct: 306 SAPASQTPRLSHMKDGVVP 324


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 61  MPTEPQSPTPNSKTIFT-----TASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETT 225
           +PT  ++PTP ++ +FT     TA  +PTT        + T  R   + Q+  T    TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240

Query: 226 R 228
           +
Sbjct: 241 K 241


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 366 KARPSRLYISLMLFSAKISVNSTGKHSRTISLEPCIQT 253
           KA+    +     F++ +S   T  H R++S +PC+QT
Sbjct: 556 KAKSEGFFRHKQSFASAVSSKKTAIHHRSVSEDPCVQT 593


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 58  YMPTEPQSPTPN--SKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR* 231
           Y PT   +PT +  + T +T+ +S  TTT      + ++ T    ++  + T SY +T  
Sbjct: 56  YTPTPSYTPTTSYTTTTSYTSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTST-- 113

Query: 232 TAWSTPTS 255
           T++++ TS
Sbjct: 114 TSYTSTTS 121


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = +1

Query: 64  PTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 243
           PT P  PTP + T    + + PT+T P +     T       +Q + T +  T       
Sbjct: 24  PT-PTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPK 82

Query: 244 TPTSLDARLQGYRPGVLP 297
           TPT   + L    P   P
Sbjct: 83  TPTPTTSTLTKPTPATTP 100


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 382 QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 477
           QQQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 301 QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 365 LTLRDDSNNDGR-LAYGDGKDKT-SPKVSWKFVPLWENNKVYFKIVNTQRISI*RCQLKQ 538
           LTLRDD+    R L   DG ++   P   +++VPL + N +  +I     +    C +K 
Sbjct: 170 LTLRDDTVPVKRNLGVFDGPEQRFCPAGVYEYVPLEKGNGMRLQINAQNCVHCKTCDIKD 229

Query: 539 PRPKTTW 559
           P     W
Sbjct: 230 PSQNINW 236


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 58  YMPTEPQSPTPN--SKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR* 231
           Y PT   +PTP+  S T +T+ +S  +TT      + ++      ++  + T SY +T  
Sbjct: 155 YTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTPTPSYTSTPSYTSTTSYTCTTSYTST-- 212

Query: 232 TAWSTPTS 255
           T+++  TS
Sbjct: 213 TSYTCTTS 220


>SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 545 PKTTWPTGSTASKVLRPNGP 604
           P T+WP+    + +LRPN P
Sbjct: 18  PNTSWPSHGAQTDILRPNNP 37


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 79  SPTPNSKTIFTTASSLP--TTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPT 252
           +PT  + T  TT ++ P  TTT P         T  + ++  +  N+  TT  T  +TPT
Sbjct: 116 TPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTTTTTPT 175

Query: 253 S 255
           +
Sbjct: 176 A 176


>SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 40  VFSWRLYMPTEPQSPTPN-SKTIFTTASSLPTTTMPLKKANRSTRT 174
           +  W+ Y    P+ P    +KT  TTA++  +TT    KA  +T+T
Sbjct: 128 IAKWQFYDRKMPRLPRGTFAKTRATTATTTTSTTTKTSKATTTTKT 173


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 58  YMPTEPQSPTPNSKTIFTTASSLPTTTMPLKKANRSTR 171
           Y PT PQ P+   + I T     P+ +   K+ NR T+
Sbjct: 91  YQPTTPQQPSLLDEPIVTPPIPSPSESSSPKRPNRKTK 128


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 QEERSHHKCRKQTHTKQ-QDELHGVRLPVWMQGSKDIVR 286
           Q ER H K    T TK+ QD+L   R+  W +GS+ I R
Sbjct: 28  QWERVHGKLLPNTATKRRQDQLAFFRIIAWKRGSRWIRR 66


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +1

Query: 73  PQSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTP 249
           P + TP  +T  TT +S P+T+ P      ST T  A S+    T S  TTR  + STP
Sbjct: 82  PSTSTP--RTGSTTTTSAPSTSTP---RTGSTTTTSAPSTS---TTSNSTTRAPSTSTP 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,065
Number of Sequences: 59808
Number of extensions: 325080
Number of successful extensions: 1238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)