Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0561
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   1.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 470 NNKVYFKIVNTQRISI---*RCQLKQPRPKTTW 559
           N K+Y+ I+N ++I +     C    PRP   W
Sbjct: 333 NKKLYYNIINIEQIPVPVPVYCGNFPPRPMGPW 365


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +2

Query: 470 NNKVYFKIVNTQRISI-----*RCQLKQPRPKTTW 559
           N K+Y+ I+N ++I +       C    PRP   W
Sbjct: 329 NKKLYYNIINIEQIPVPVPVPIHCGNFPPRPMGPW 363


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +1

Query: 76  QSPTPNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTS 255
           Q  T N  T    A+S+ TTT   ++  +  + ++ +  Q   ++ Y     +  S+P  
Sbjct: 770 QCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRY 829

Query: 256 LDA 264
           L A
Sbjct: 830 LSA 832


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 19   KPFKLFCVFSWRLYMPTEPQSP 84
            +P  +F   +   YMP+EP++P
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAP 967


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +2

Query: 470 NNKVYFKIVNTQRISI-----*RCQLKQPRPKTTW 559
           N K+Y+ I+N ++I +       C    PRP   W
Sbjct: 109 NKKLYYNIINIEQIPVPVPVPVYCGNFPPRPMGPW 143


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +2

Query: 470 NNKVYFKIVNTQRISI-----*RCQLKQPRPKTTW 559
           N K+Y+ I+N ++I +       C    PRP   W
Sbjct: 109 NKKLYYNIINIEQIPVPVPVPVYCGNFPPRPMGPW 143


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = +1

Query: 238  WSTPTSLDARLQGYRPGVLPC*VHTYFRRKQH*ADVQARRSCFDVAR*QQQRWQTCLRRW 417
            W+ P  + +      P V       YF   +     + +R+   V + QQQ+ Q   ++ 
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQ---QQQ 1220

Query: 418  QGQDESKSQLEVRSSVGEQQGL 483
            Q Q + + Q + +    E++G+
Sbjct: 1221 QQQQQQQQQQQQQHQAREREGV 1242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,451
Number of Sequences: 438
Number of extensions: 3101
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)