Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0561
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    33   0.13 
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    32   0.39 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    30   1.2  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    29   2.1  
At3g18590.1 68416.m02363 plastocyanin-like domain-containing pro...    29   2.7  
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge...    28   4.8  
At4g31110.1 68417.m04415 wall-associated kinase, putative simila...    28   4.8  
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   4.8  
At4g04190.2 68417.m00595 expressed protein                             28   4.8  
At4g04190.1 68417.m00594 expressed protein                             28   4.8  
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r...    28   6.3  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    28   6.3  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    27   8.3  
At5g48335.1 68418.m05971 expressed protein                             27   8.3  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    27   8.3  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 3   DAQKMKT-VQVILCLFVASLYANGTSVSDSKLEDDLYNSI--LVADYDNAVEKSKQIYED 173
           D  ++KT VQ I C+      A+ T++  SK  DDL   I  L+ D +  +E  +Q+ E+
Sbjct: 711 DQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEE 770

Query: 174 KKSEVITNVVNKLIRNN 224
             S     +      NN
Sbjct: 771 NSSRAWGKIETDSSSNN 787


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +3

Query: 12  KMKTVQVILCLFVASLYANGTSVSDSKL-EDDLYNSILVADYDNAVEKSKQIYEDKKSEV 188
           K KT Q +LC+   +++    S + +++  D++ + I+  DYD  V+ S  I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 189 ITNVVN 206
           +TN V+
Sbjct: 458 LTNGVD 463


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 60  YANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 239
           Y     +   KLED L  SIL     N+  K ++++  K+   +T+ VN+L  + ++   
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 240 EYAY 251
            Y +
Sbjct: 411 SYPF 414


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 60  YANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 239
           Y     +   KLED L  SIL     N+  K ++++  K+   I + VN+L R+ ++  +
Sbjct: 313 YRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRI--L 368

Query: 240 EYAY 251
            Y+Y
Sbjct: 369 SYSY 372


>At3g18590.1 68416.m02363 plastocyanin-like domain-containing
           protein
          Length = 188

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 76  QSPTPNSKTIFTTASSLPTTTMPLKKAN 159
           +SP P+S +  +++SSLP +T   KK+N
Sbjct: 134 ESPPPSSSSSSSSSSSLPASTPKAKKSN 161


>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
           (glycogenin)-related similar to glycogenin
           glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
           Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
           Oryctolagus cuniculus [GI:165513]; contains Pfam profile
           PF01501: Glycosyl transferase family 8
          Length = 593

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = -1

Query: 487 EVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKC 308
           ++DLVV+      P + W R VL + V    +V A +A ++ KT     +  V+F  +KC
Sbjct: 173 KLDLVVVKLPCNYPEEGWRREVLRLQVN---LVAANLAAKKGKT-DWRWKSKVLFW-SKC 227

Query: 307 ELNREALPDDILGALHPDW*AYSMQFI-LLFRMSL 206
           +   E    D L     DW  Y  + + L  R+SL
Sbjct: 228 QPMIEIFRCDDLEKREADWWLYRPEVVRLQQRLSL 262


>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
           to wall-associated kinase 1, Arabidopsis thaliana,
           gb:AJ009696
          Length = 756

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 203
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 430 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 462


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 203
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 458 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 490


>At4g04190.2 68417.m00595 expressed protein 
          Length = 184

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 445 LEVRSSVGEQQ-GLLQDCEHSAYQYLTLSVKTTPTQNHM--AYGVNSVEGFKAQWTL 606
           L VR    E + GL    E +  +   L  + T  + H+  A G   +EGF+ +W+L
Sbjct: 81  LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSL 137


>At4g04190.1 68417.m00594 expressed protein 
          Length = 184

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 445 LEVRSSVGEQQ-GLLQDCEHSAYQYLTLSVKTTPTQNHM--AYGVNSVEGFKAQWTL 606
           L VR    E + GL    E +  +   L  + T  + H+  A G   +EGF+ +W+L
Sbjct: 81  LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSL 137


>At3g45850.1 68416.m04962 kinesin motor protein-related
           kinesin-related protein TKRP125, Nicotiana tabacum,
           PIR:T02017
          Length = 1058

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = +1

Query: 385 QQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHSAYQYLTLSVKTTPTQNHMAY 564
           + +++ C    + Q   K    + +S   ++ L+Q   H   +  + S +TT  Q+ M+ 
Sbjct: 753 ENKFEECAANEERQLLEKVAELLANSNARKKNLVQMAVHDLRE--SASTRTTTLQHEMST 810

Query: 565 GVNSVEGFKAQWTLQPAKYDN 627
             +S    KA+W++   K ++
Sbjct: 811 MQDSTSSIKAEWSIHMEKTES 831


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 203
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 465 VYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVV 497


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 63  ANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME 242
           +NG S+    L+   ++S L+  +DN V      +ED + +V  +   +  R N +N  +
Sbjct: 436 SNG-SLRTGILKPFTFSSALICVFDNGVSPQTVDHEDSRKKVSCSEYKRKPRKNSLN--D 492

Query: 243 YAYQSGCKA 269
            +++  C++
Sbjct: 493 ISWEEFCRS 501


>At5g48335.1 68418.m05971 expressed protein
          Length = 114

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  PNSKTIFTTASSLPTTTMPLKKANRSTRTRRAKSS 192
           PNS +    ++S P    P  + NRS+  RR++ S
Sbjct: 4   PNSSSSLVDSTSAPKRYTPPNQRNRSSNRRRSRGS 38


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 632 TSLSYLAGCKV-HWALKPSTLLTP*AMWFWVGV 537
           ++L++L G KV H  ++PS +L   ++W W+ +
Sbjct: 270 SALAHLHGLKVSHGDIRPSNILLSDSLWSWLTI 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,175
Number of Sequences: 28952
Number of extensions: 220333
Number of successful extensions: 874
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)