Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0560
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    28   1.3  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    26   3.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.2  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    26   5.2  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   6.9  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   6.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.1  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 390 LDERKDQRRHVRLRFYCRVLPQNRLQGSLPARSL 491
           LDER +  R++R   Y + L +  ++  LP RS+
Sbjct: 69  LDERSEMVRYLRASGYAKFLEKYLIEEELPVRSI 102


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 466 KGLYLPAPYEIYPYSSLTAM--SSVKPL 543
           KGL++P P E+ PY  L  +  +S+ PL
Sbjct: 31  KGLHIPNPAELGPYDVLVEVVATSINPL 58


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 71   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 205
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 110 MKELCIMK--LLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDV-VKQFMG-CIRWACS 277
           M  LC     LL H+   T  E  KE   EYNIEK+ +    +D+ V+QF+  CI   C 
Sbjct: 181 MDTLCFQAPVLLRHL---TFSEQRKEPISEYNIEKALN---GLDMSVEQFVDLCILLGCD 234

Query: 278 RVE 286
             E
Sbjct: 235 YCE 237


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 92  VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 199
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 188 KEYNI--EKSCDKYMNVDVVKQFMGCIRWA 271
           K++N   EK+ +KY ++D+++ ++ C R A
Sbjct: 59  KKFNARKEKTGEKYFSIDILRFYIRCTRCA 88


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 310  LQMEEAVKVFRVLYYAKDFD 369
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,153
Number of Sequences: 5004
Number of extensions: 46183
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)