Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0560
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263...    27   9.4  
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    27   9.4  

>07_01_0359 -
           2633735-2634115,2634345-2634600,2634708-2635552,
           2635681-2635956,2636778-2636941,2637924-2638197
          Length = 731

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 577 TGSLAALVIFIIKALLMTWLSTK 509
           T  L + VIF++  L+ TWLS++
Sbjct: 8   TSLLTSFVIFVVLVLVFTWLSSR 30


>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
            30670186-30670281,30670679-30670828,30670956-30671100,
            30671178-30671251,30671325-30671445,30671697-30671821,
            30671898-30672047,30672249-30672324,30672496-30672557,
            30672597-30672839,30673354-30673683,30673776-30673932,
            30674008-30674139,30674219-30674277,30674734-30674798,
            30674878-30675094,30675413-30675499,30675655-30675750,
            30675938-30676003,30676096-30676287,30676380-30676532,
            30676812-30677052,30677322-30677515,30678212-30678348,
            30678474-30678480,30678708-30678830,30679370-30679427,
            30680018-30680090,30680493-30681765
          Length = 1714

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 56   GYGTMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVD 235
            G   M+F +  +V  ++K K  C  +  + +   T  E +KE+ KE +I    ++   VD
Sbjct: 967  GVKGMLFEEFSVVEEELK-KSFCRKQASEALATQTSMEVVKEVLKEASILTIEEEQPFVD 1025

Query: 236  VVKQFMGCIRW 268
            +       I W
Sbjct: 1026 LSHNLKAAITW 1036


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,109
Number of Sequences: 37544
Number of extensions: 342001
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)