Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0560
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   1.8  
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   5.5  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  27   9.6  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 271 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 441
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 442 A 444
           +
Sbjct: 280 S 280


>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 390 LDERKDQRRHVRLRFYCRVLPQNRLQGSLPARSLRDLSL 506
           LDE K+  R +  +FY   LP N +Q +LP  ++ D S+
Sbjct: 391 LDEEKELFR-IERQFYV-TLPSNAIQDALPGNTISDFSI 427


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 382 TACWMRERINGGMFVYAFTAACFHR 456
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 346 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 462
           L+  ++F+V   T C + ER N      + +  CF+  D
Sbjct: 70  LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 400  ERINGGMFVYAFTAACFHRTDCKGLYLPAPYEIYPYSSLTAMSSV 534
            ERI       A T  C +R++   +   +P+ +YPY S+  ++ +
Sbjct: 1268 ERIGCAHDSLASTRECLYRSNVARIIQKSPWNVYPYWSMPDLTDL 1312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,756,293
Number of Sequences: 59808
Number of extensions: 379795
Number of successful extensions: 1261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)