Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0559
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0260 - 13580396-13582990                                         29   2.5  
02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950           29   2.5  
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753...    28   7.5  

>04_03_0260 - 13580396-13582990
          Length = 864

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -2

Query: 539 HXPGHAQXLLQLTPGTCSVTTIVXIMPTKATTSLAASEVSSSKCFLLRTLLSPLLKAMIA 360
           H    A   +QLTP + + T      PT+ T+S A ++  S+K   ++ +L   L A I 
Sbjct: 452 HYNSSAYLKVQLTPSSAAPTQNSSSAPTQ-TSSFALTQNKSNK---MKAILGSTLAASIT 507

Query: 359 IVFPIIPIAY 330
           +V   I + Y
Sbjct: 508 LVLVAIIVVY 517


>02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950
          Length = 363

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 285 LHQQTAVIWDRREDRVRYRNNWEHYSYHRFEERRE 389
           LH Q     DR  ++ RYR N+  +  H   +R E
Sbjct: 281 LHSQFTSYGDRNSEQCRYRRNYSCHKIHHLTKRTE 315


>10_07_0091 -
           12774590-12774664,12774971-12775134,12775249-12775382,
           12775463-12775556,12775650-12775758,12776055-12776103,
           12778336-12778376,12779539-12779571,12779665-12779754,
           12780474-12780507,12781218-12781510,12781859-12782057,
           12782129-12782289,12783130-12783282,12783545-12783715,
           12783822-12783921,12784023-12784111,12784192-12784290,
           12784406-12784676,12784764-12784961,12785041-12785140,
           12785799-12785931,12786016-12786277,12787106-12787155
          Length = 1033

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 262 FDSCPEVKLGEV*WCRLSEVQSYDVLHGGGA 170
           FDSCP++K+ ++  C+     S D L+  GA
Sbjct: 655 FDSCPQLKILKLSACKYLSDSSLDALYREGA 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,631
Number of Sequences: 37544
Number of extensions: 197956
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)