Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0559
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)                      29   3.3  
SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30)                 29   4.4  
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 509 QLTPGTCSVTTIVXIMPTKATTSLAASEVS-SSKCF 405
           Q TPG C V+ I   MPT A  S   S+ S SS CF
Sbjct: 534 QTTPG-CPVSLIADFMPTSAAQSYVNSDSSCSSNCF 568


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 252 HESNQHHIKLKLHQQTAVIWDRREDRVRYRNNWEHYSYHRFEE 380
           H+ N++ ++++ H +        E+ ++ R + EH  YH++ E
Sbjct: 52  HKYNENSLQVRTHIEHIQYHKYNENSLQVRTHIEHIQYHKYNE 94


>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
          Length = 269

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 252 HESNQHHIKLKLHQQTAVIWDRREDRVRYRNNWEHYSYHRFEE 380
           H+ N++ ++++ H +        E+ ++ R + EH  YH++ E
Sbjct: 223 HKYNENSLQVRTHIEHIQYHKYNENSLQVRTHIEHIQYHKYNE 265


>SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30)
          Length = 308

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 507 LKQXLCVTR-VVLRVFGIGSVXIAVTXALERYLALTRXFLYXKQV 638
           L+  +C++  + +R  G  +V       LERY+ +TR F Y  +V
Sbjct: 80  LQLDVCISMDMCMRFLGFSTVSHLTVLTLERYVRITRPFEYRSRV 124


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 549 FGIGSVXIAVTXALERYLALTRXFLYXK 632
           FGI SV      A+ RY+A++  FLY K
Sbjct: 677 FGIVSVWTMCLIAVNRYIAISHPFLYTK 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,259
Number of Sequences: 59808
Number of extensions: 225151
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)