Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0559
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   8.9  

>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 333 RYRNNWEHYSYHRFEERREEGP 398
           RY + W HYSYH    R  E P
Sbjct: 374 RYNSTWIHYSYHDENRREIESP 395


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -2

Query: 521 QXLLQLTPGTCSVTTIVXIMPTKATTSLAA------SEVSSSKCFLLRTLLSPLLKAMIA 360
           + ++ L   +C VT  +   PT+A T+LA       ++ +S K F   +   P+LK+   
Sbjct: 40  EKMIPLLKESCPVTCKLC-PPTEAPTTLAPCFDDKDTDCASFKQFCSNSKYIPMLKSFCP 98

Query: 359 IVFPIIPIAYTIFTTIPNNCR 297
           +   + P A T+  T   NC+
Sbjct: 99  VTCNMCPGATTVMPTPNPNCQ 119


>Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical
           protein F36G9.9 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 497 GTCSVTTIVXI-MPTKATTSLAASEVSSSKCF-LLRTLLSPLLKAMIAIVFPIIPIAYTI 324
           G   VT IV I M +++  S+  S  +      L+++L   ++  ++A   PII +   +
Sbjct: 210 GIGMVTVIVLIWMSSRSLKSIQISLTTKRMHLQLIKSLCQQIIVPILAFYIPIIVVVVPL 269

Query: 323 FTTIPNN 303
             +IPN+
Sbjct: 270 MLSIPNS 276


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = +3

Query: 288  HQQTAVIWDRREDRVR-----YRNNWEHYSYHRFEERREE 392
            H    V  DRR+DR R     YR     Y Y R  ER +E
Sbjct: 940  HHPNYVSLDRRDDRDRDREGRYRRAGSSYEYRRLPEREKE 979


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,397,822
Number of Sequences: 27780
Number of extensions: 163684
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)