Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0558
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   3.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   3.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.4  

>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 319 NNVILHKKCLTLILTFYSIYLYF 251
           +N+I+H+KC   I+ +Y  ++ F
Sbjct: 357 DNIIIHQKCPLKIIEYYEAHIKF 379


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +3

Query: 501 IEIIPIHTIVNYKRCVRNNLFKLRLTSK---IINC 596
           ++I P+H+IV+Y+   R+N+  + +  K   +INC
Sbjct: 310 LKITPMHSIVDYEIAKRHNIDCVSIMDKSGNLINC 344


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 545 TPFIVNNCMYRNYLNFKI-LIIEKHIMIVL 459
           TPF   +   +NY+ F I L +  HI+I+L
Sbjct: 151 TPFNARSANLKNYIAFPICLFVINHILILL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,832
Number of Sequences: 5004
Number of extensions: 41051
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)